| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 332365 | 13 (0.120) | 168 (1.530) | 82/98 | 0.0 | 92.8% | intergenic (+489/‑6) | yahV/pdeL | protein YahV/DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL |
| ? | NC_000913 | 377317 = | NA (NA) | intergenic (+6/+218) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
Only 100 of 189 total aligned reads displayed.
ACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGG > NC_000913/377268‑377366 | acCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAg < 2:948633/50‑1 (MQ=255) aatcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGa < 2:2283323‑M2/2‑1 (MQ=255) aatcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGa < 1:5221455‑M2/2‑1 (MQ=255) atcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGa > 1:4568003‑M2/48‑49 (MQ=255) atcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGa > 2:1302424‑M2/48‑49 (MQ=255) atcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGAt < 2:3185527‑M2/3‑1 (MQ=255) atcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGAt < 1:1576906‑M2/3‑1 (MQ=255) tcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGAt > 1:3373245‑M2/47‑49 (MQ=255) tcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGAt > 2:591687‑M2/47‑49 (MQ=255) tcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGATa < 1:3541987‑M2/4‑1 (MQ=255) gacaggtaatcactcatactgaacagcgataaaagataaaggtgGATAAg > 2:4315150‑M2/45‑50 (MQ=255) acaggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGt > 2:1694817‑M2/44‑50 (MQ=255) acaggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGt < 2:5089976‑M2/7‑1 (MQ=255) tGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTc < 1:2692651/50‑1 (MQ=255) caggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTc > 1:103141‑M2/43‑50 (MQ=255) caggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTc > 2:2999429‑M2/43‑50 (MQ=255) caggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTc < 1:535445‑M2/8‑1 (MQ=255) gCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCg > 2:4015727/1‑50 (MQ=255) aggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCg > 2:3918500‑M2/42‑50 (MQ=255) gtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTg < 2:1208185‑M2/11‑1 (MQ=255) cGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTg < 2:3904117/50‑1 (MQ=255) taatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgc > 1:2802159‑M2/39‑50 (MQ=255) taatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgc > 1:2000316‑M2/39‑50 (MQ=255) taatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgc < 1:1437986‑M2/12‑1 (MQ=255) taatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgc > 1:1945337‑M2/39‑50 (MQ=255) gACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTgc < 2:4155380/50‑1 (MQ=255) aatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgcg > 2:2781712‑M2/38‑50 (MQ=255) tcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgcg > 1:1248205‑M2/36‑48 (MQ=255) actcatactgaacagcgataaaagataaaggtgGATAAGTCGTgcg > 2:4949934‑M2/34‑46 (MQ=255) actcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAg < 2:3306715‑M2/16‑1 (MQ=255) actcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAg < 1:2058895‑M2/16‑1 (MQ=255) ctcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGAt < 2:1400001‑M2/18‑1 (MQ=255) ctcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGAt > 2:1581021‑M2/33‑50 (MQ=255) ctcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGAt > 2:5031290‑M2/33‑50 (MQ=255) catactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGc > 1:1927316‑M2/31‑50 (MQ=255) atactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGcc > 1:259600‑M2/30‑50 (MQ=255) atactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGcc < 1:2668056‑M2/21‑1 (MQ=255) tactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCt < 1:4224403‑M2/22‑1 (MQ=255) tactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCt < 1:2493050‑M2/22‑1 (MQ=255) tactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCt < 2:2193317‑M2/22‑1 (MQ=255) tactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCt < 2:709466‑M2/22‑1 (MQ=255) tactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCt < 1:3886571‑M2/22‑1 (MQ=255) actgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCt > 2:2075179‑M2/28‑49 (MQ=255) actgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTg < 2:2838859‑M2/23‑1 (MQ=255) ctgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTg < 2:3109200‑M2/23‑1 (MQ=255) ctgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGa > 1:4936405‑M2/27‑50 (MQ=255) tgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGAt > 1:3691466‑M2/26‑50 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGAt < 1:5027499‑M2/25‑1 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGAt < 2:5230526‑M2/25‑1 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATg < 1:904542‑M2/26‑1 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGc > 2:4576405‑M2/24‑50 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGc < 1:1878139‑M2/27‑1 (MQ=255) acagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGc > 1:4562866‑M2/23‑49 (MQ=255) tgatTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGa < 1:2201116/50‑1 (MQ=255) cagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGa > 1:5182631‑M2/22‑50 (MQ=255) agcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGAc < 2:2334698‑M2/30‑1 (MQ=255) agcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGAc > 2:2642603‑M2/21‑50 (MQ=255) agcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGAc > 1:1857253‑M2/21‑50 (MQ=255) agcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGAc > 2:1512832‑M2/21‑50 (MQ=255) agcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGAc > 1:3952833‑M2/21‑50 (MQ=255) agcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGAc < 1:3746702‑M2/30‑1 (MQ=255) agcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGAc > 1:3085273‑M2/21‑50 (MQ=255) gcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACg > 2:2609223‑M2/20‑50 (MQ=255) gataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGc > 2:3728683‑M2/18‑49 (MQ=255) gataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGc > 1:508901‑M2/18‑49 (MQ=255) ataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTa < 1:4124205‑M2/34‑1 (MQ=255) ataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTa > 1:4084564‑M2/17‑50 (MQ=255) taaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTAt > 1:4803496‑M2/16‑50 (MQ=255) taaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTAt < 2:4081615‑M2/35‑1 (MQ=255) aaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATg > 2:2316614‑M2/15‑50 (MQ=255) aaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATg > 1:3501847‑M2/15‑50 (MQ=255) aTGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTAt < 2:1407311/49‑1 (MQ=255) aaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgc > 1:825183‑M2/14‑50 (MQ=255) aaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgc < 2:2972483‑M2/37‑1 (MQ=255) aaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgc < 1:4620143‑M2/37‑1 (MQ=255) gtgGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgcg > 2:4448713/1‑50 (MQ=255) agataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgcgc < 2:2488141‑M2/39‑1 (MQ=255) agataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgcgc < 2:2413839‑M2/39‑1 (MQ=255) agataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgcgc > 2:4728624‑M2/12‑50 (MQ=255) ggTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGcgcg > 2:2825721/1‑50 (MQ=255) gTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGt < 2:3933288/50‑1 (MQ=255) ataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGt > 2:1851891‑M2/10‑50 (MQ=255) ataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGt > 1:5044753‑M2/10‑50 (MQ=255) taaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTc < 1:2577459‑M2/42‑1 (MQ=255) taaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTc < 2:4744234‑M2/42‑1 (MQ=255) aaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCtt < 1:1126024‑M2/44‑1 (MQ=255) aaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCt < 1:2938965‑M2/43‑1 (MQ=255) aaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCt < 1:1675144‑M2/43‑1 (MQ=255) aggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTa < 1:2316622‑M2/45‑1 (MQ=255) ggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAt < 1:548978‑M2/46‑1 (MQ=255) ggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAt > 2:2246184‑M2/5‑50 (MQ=255) gtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAt > 1:361562‑M2/4‑49 (MQ=255) gtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAt > 1:598765‑M2/4‑49 (MQ=255) gtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAt > 1:3197422‑M2/4‑49 (MQ=255) gtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATc < 2:3449382‑M2/47‑1 (MQ=255) tgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAt > 1:4755837‑M2/3‑48 (MQ=255) gGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAg > 2:1989039‑M2/2‑50 (MQ=255) gATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAgg > 2:796241/1‑50 (MQ=255) gATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAg < 1:4445077/49‑1 (MQ=255) gATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAg < 1:2565541/49‑1 (MQ=255) | ACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGG > NC_000913/377268‑377366 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |