| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 997867 | 6 (0.050) | 134 (1.220) | 66/98 | 0.0 | 94.0% | intergenic (‑355/‑1) | ssuE/elfA | NADPH‑dependent FMN reductase/putative laminin‑binding fimbrial subunit |
| ? | NC_000913 | 1004686 = | 11 (0.100) | intergenic (+29/‑82) | ycbF/pyrD | putative fimbrial chaperone YcbF/dihydroorotate dehydrogenase, type 2 | |||||
Only 100 of 141 total aligned reads displayed.
ATGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGATGAAAAAAAGTGTATTGACGGCGTTTATAACTGTGGTATGTGCAACGT > NC_000913/997818‑997916 | aTGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACg < 1:1077799/50‑1 (MQ=255) gTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtt > 2:2703602‑M1/1‑48 (MQ=255) tCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGttt < 1:3245067‑M1/50‑4 (MQ=255) tCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGttt < 2:3534972‑M1/50‑4 (MQ=255) tCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGttt < 1:4341805‑M1/50‑4 (MQ=255) tCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGttt < 2:3004408‑M1/50‑4 (MQ=255) tCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGttt > 1:1592125‑M1/1‑47 (MQ=255) tCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtt < 1:588322‑M1/49‑3 (MQ=255) tCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtt < 1:2197035‑M1/49‑3 (MQ=255) cATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttg > 2:19857‑M1/1‑46 (MQ=255) aTTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgc < 2:2515931‑M1/50‑6 (MQ=255) aTTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgc < 2:3603212‑M1/50‑6 (MQ=255) aTTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttg < 2:4689756‑M1/49‑5 (MQ=255) tttAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgcc > 2:625180‑M1/1‑44 (MQ=255) ttAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccg > 1:27693‑M1/1‑43 (MQ=255) ttAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGATGaaa > 1:1342053/1‑49 (MQ=255) tAAAGGCTTTATCATATTTACGAAGAGATCAGGATGATAACGtttgccg > 2:2845129‑M1/1‑42 (MQ=255) aaaGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgc < 2:1571342‑M1/49‑9 (MQ=255) aaaGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccg > 1:5140359‑M1/1‑41 (MQ=255) aaaGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccg > 1:2480123‑M1/1‑41 (MQ=255) aaGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcag < 1:1639560‑M1/50‑11 (MQ=255) aaGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcag > 2:2995473‑M1/1‑40 (MQ=255) aaGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgca < 2:3755360‑M1/49‑10 (MQ=255) aaGGCATTAGCATATGTACGAAGAGATCAGGATGATAACGtttgccgca < 1:2638971‑M1/49‑10 (MQ=255) aGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcagg > 1:2782338‑M1/1‑39 (MQ=255) ggCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggt > 2:2282853‑M1/1‑38 (MQ=255) gCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggt > 2:4043099‑M1/1‑37 (MQ=255) gCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggt > 1:2721183‑M1/1‑37 (MQ=255) cATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtca < 2:1804368‑M1/50‑15 (MQ=255) aTTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaa < 2:4562095‑M1/50‑16 (MQ=255) aTTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaa < 2:4361973‑M1/50‑16 (MQ=255) ttATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaat < 2:2654407‑M1/50‑17 (MQ=255) ttATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaat > 2:2066100‑M1/1‑34 (MQ=255) tATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaatt > 1:3579169‑M1/1‑33 (MQ=255) tATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaatt > 2:3732648‑M1/1‑33 (MQ=255) aTCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattc > 2:1876509‑M1/1‑32 (MQ=255) cATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccc > 1:2755996‑M1/1‑30 (MQ=255) atatTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccct > 2:1243512‑M1/1‑29 (MQ=255) atatTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccct > 1:4401188‑M1/1‑29 (MQ=255) atatTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccct > 2:84482‑M1/1‑29 (MQ=255) tatTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccctt > 1:2560266‑M1/1‑28 (MQ=255) atTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttt > 1:4036150‑M1/1‑27 (MQ=255) tttACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttt < 2:3936690‑M1/49‑24 (MQ=255) tttACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttt < 2:4806328‑M1/49‑24 (MQ=255) tACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttgg > 2:1728503‑M1/1‑24 (MQ=255) aCGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggt > 1:4024524‑M1/1‑23 (MQ=255) aCGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttgg < 2:5097195‑M1/49‑27 (MQ=255) aCGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttgg < 1:4960252‑M1/49‑27 (MQ=255) cGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtc > 1:3141028‑M1/1‑22 (MQ=255) cGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtc > 2:3533487‑M1/1‑22 (MQ=255) cGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtc < 2:4356856‑M1/50‑29 (MQ=255) gAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtcc > 2:3219327‑M1/1‑21 (MQ=255) gAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtcc < 1:1532808‑M1/50‑30 (MQ=255) gAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtcc > 2:4135169‑M1/1‑21 (MQ=255) gAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtcc > 2:2246540‑M1/1‑21 (MQ=255) agagATCAGGATGATAACGtttgccgcaggtcaattcccttttggtccga < 2:4987300‑M1/50‑32 (MQ=255) agagATCAGGATGATAACGtttgccgcaggtcaattcccttttggtccg > 1:2087633‑M1/1‑19 (MQ=255) agagATCAGGATGATAACGtttgccgcaggtcaattcccttttggtccg > 2:3050987‑M1/1‑19 (MQ=255) agagATCAGGATGATAACGtttgccgcaggtcaattcccttttggtccg > 2:2035602‑M1/1‑19 (MQ=255) gagaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaa > 2:2267743‑M1/1‑18 (MQ=255) gagaTCAGGATGATAACGtttgccgcaggtcaattcccgtttggtccgaa < 1:1946427‑M1/50‑33 (MQ=255) gagaTCAGGATGATAACGtttgccgcaggacaattctctcttggtccgaa > 1:4817081‑M1/1‑18 (MQ=255) gagaTCAGGATGATAACGATGAAAAAAAGTGTATTGACGGCGTTTATAAc > 2:1368845/1‑50 (MQ=255) agaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaac > 1:114747‑M1/1‑17 (MQ=255) agaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaac > 2:3984491‑M1/1‑17 (MQ=255) agaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaac > 1:195835‑M1/1‑17 (MQ=255) agaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaac > 1:5298368‑M1/1‑17 (MQ=255) gaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaact < 1:2417252‑M1/50‑35 (MQ=255) gaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaact > 2:4755600‑M1/1‑16 (MQ=255) gaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaact < 2:2553201‑M1/50‑35 (MQ=255) gaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaact > 1:1016541‑M1/1‑16 (MQ=255) aTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactc > 1:2889986‑M1/1‑15 (MQ=255) tCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactcg > 1:3099148‑M1/1‑14 (MQ=255) tCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactcg > 2:1375529‑M1/1‑14 (MQ=255) tCAGGATGATAACGATGAAAAAAAGTGTATTGACGGCGTTTATAACtgtg > 1:1760892/1‑50 (MQ=255) cAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactcg > 1:2120492‑M1/1‑13 (MQ=255) cAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactcg > 2:629875‑M1/1‑13 (MQ=255) aGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactcgca > 1:4532220‑M1/1‑12 (MQ=255) aGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactcgca > 2:3852631‑M1/1‑12 (MQ=255) aGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactcgca > 1:3484137‑M1/1‑12 (MQ=255) aGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactcgc < 1:79636‑M1/49‑38 (MQ=255) gatgatAACGtttgccgcaggtcaattcccttttggtccgaactcgcaca > 1:1859062‑M1/1‑10 (MQ=255) atgatAACGtttgccgcaggtcaattcccttttggtccgaactcgcacat < 1:2502503‑M1/50‑42 (MQ=255) atgatAACGtttgccgcaggtcaattcccttttggtccgaactcgcaca > 1:4248005‑M1/1‑9 (MQ=255) atgatAACGtttgccgcaggtcaattcccttttggtccgaactcgcaca > 2:5056959‑M1/1‑9 (MQ=255) atgatAACGtttgccgcaggtcaattcccttttggtccgaactcgcaca > 2:5293493‑M1/1‑9 (MQ=255) atgatAACGtttgccgcaggtcaattcccttttggtccgaactcgcaca > 1:727085‑M1/1‑9 (MQ=255) atAACGtttgccgcaggtcaattcccttttggtccgaactcgcacataat < 1:4589473‑M1/50‑45 (MQ=255) atAACGtttgccgcaggtcaattcccttttggtccgaactcgcacataa > 2:1872835‑M1/1‑6 (MQ=255) atAACCtttgccgcaggtcaattcccttttggtccgaactcgcacataa > 2:308521‑M1/1‑6 (MQ=255) aaCGtttgccgcaggtcaattcccttttggtccgaactcgcacataatac > 1:3144041‑M1/1‑4 (MQ=255) aCGtttgccgcaggtcaattcccttttggtccgaactcgcacataatacg < 1:4140010‑M1/50‑48 (MQ=255) aCGtttgccgcaggtcaattcccttttggtccgaactcgcacataatacg < 2:2269037‑M1/50‑48 (MQ=255) aCGtttgccgcaggtcaattcccttttggtccgaactcgcacataatacg < 2:914346‑M1/50‑48 (MQ=255) cGtttgccgcaggtcaattcccttttggtccgaactcgcacataatacgc > 1:2473097‑M1/1‑2 (MQ=255) gtttgccgcaggtcaattcccttttggtccgaactcgcacataatacgcc > 1:4246198‑M1/1‑1 (MQ=255) gtttgccgcaggtcaattcccttttggtccgaactcgcacataatacgcc > 1:4400726‑M1/1‑1 (MQ=255) gtttgccgcaggtcaattcccttttggtccgaactcgcacataatacgcc > 2:3086411‑M1/1‑1 (MQ=255) gtttgccgcaggtcaattcccttttggtccgaactcgcacataatacgcc > 1:1454022‑M1/1‑1 (MQ=255) gATGAAAAAAAGTGTATTGACGGCGTTTATAACTGTGGTATGTGCAACGt > 2:3196185/1‑50 (MQ=255) | ATGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGATGAAAAAAAGTGTATTGACGGCGTTTATAACTGTGGTATGTGCAACGT > NC_000913/997818‑997916 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |