| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 997867 | 6 (0.050) | 134 (1.220) | 66/98 | 0.0 | 94.0% | intergenic (‑355/‑1) | ssuE/elfA | NADPH‑dependent FMN reductase/putative laminin‑binding fimbrial subunit |
| ? | NC_000913 | 1004686 = | 11 (0.100) | intergenic (+29/‑82) | ycbF/pyrD | putative fimbrial chaperone YcbF/dihydroorotate dehydrogenase, type 2 | |||||
Only 100 of 150 total aligned reads displayed.
AGGAGCAAAATCTGCCCTGAAACAGGTTCGGAAAACGTTTGCGTTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCC > NC_000913/1004638‑1004735 | gtcatttaaaggcattatcatatttacgaagagatcaggatgataacgtt > 2:2703602‑M2/49‑50 (MQ=255)gtcatttaaaggcattatcatatttacgaagagatcaggatgataacgtt > 2:3971364‑M2/49‑50 (MQ=255) tcatttaaaggcattatcatatttacgcagagatcaggatgataacgttt > 2:1385159‑M2/48‑50 (MQ=255) tcatttaaaggcattatcatatttacgaagagatcaggatgataacgttt > 1:1592125‑M2/48‑50 (MQ=255) tcatttaaaggcattatcatatttacgaagagatcaggatgataacgttt < 1:4341805‑M2/3‑1 (MQ=255) tcatttaaaggcattatcatatttacgaagagatcaggatgataacgttt < 2:3534972‑M2/3‑1 (MQ=255) tcatttaaaggcattatcatatttacgaagagatcaggatgataacgttt < 2:3004408‑M2/3‑1 (MQ=255) tcatttaaaggcattatcatatttacgaagagatcaggatgataacgtt < 1:588322‑M2/2‑1 (MQ=255) tcatttaaaggcattatcatatttacgaagagatcaggatgataacgtt < 1:2197035‑M2/2‑1 (MQ=255) catttaaaggcattatcatatttacgaagagatcaggatgataacgTTTg > 2:19857‑M2/47‑50 (MQ=255) atttaaaggcattatcatatttacgaagagatcaggatgataacgTTTg < 2:3177197‑M2/4‑1 (MQ=255) atttaaaggcattatcatatttacgaagagatcaggatgataacgTTTg < 2:4689756‑M2/4‑1 (MQ=255) atttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGc < 2:2515931‑M2/5‑1 (MQ=255) tttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGcc > 2:625180‑M2/45‑50 (MQ=255) aaaaTCTGCCCTGAAACAGGTTCGGAAAACGTTTGCGTTTTTTTTGCCg > 1:4364667/1‑49 (MQ=255) aaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCg > 1:5140359‑M2/42‑48 (MQ=255) aaggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAg > 1:2493345‑M2/41‑50 (MQ=255) aaggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAg < 1:1639560‑M2/10‑1 (MQ=255) aaggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAg > 2:2995473‑M2/41‑50 (MQ=255) aaggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAg > 1:612454‑M2/41‑50 (MQ=255) aaggcattagcatatgtacgaagagatcaggatgataacgTTTGCCGCa < 1:2638971‑M2/9‑1 (MQ=255) aggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAgg > 1:2782338‑M2/40‑50 (MQ=255) aggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAgg > 2:1118789‑M2/40‑50 (MQ=255) ggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGt > 2:2282853‑M2/39‑50 (MQ=255) ttatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAt > 1:2810575‑M2/35‑50 (MQ=255) ttatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAt > 2:2066100‑M2/35‑50 (MQ=255) ttatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAt < 2:2654407‑M2/16‑1 (MQ=255) cccTGAAACAGGTTCGGAAAACGTTTGCGTTTTTTTTGCCGCAGGTCa < 1:4014682/48‑1 (MQ=255) tatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAtt > 1:3579169‑M2/34‑50 (MQ=255) tatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAtt > 2:3732648‑M2/34‑50 (MQ=255) atcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTc > 2:1876509‑M2/33‑50 (MQ=255) tcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTcc < 1:1918185‑M2/19‑1 (MQ=255) tcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTc < 2:3759624‑M2/18‑1 (MQ=255) catatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTccc > 1:2755996‑M2/31‑50 (MQ=255) atatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCt > 2:1243512‑M2/30‑50 (MQ=255) atatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCt > 2:84482‑M2/30‑50 (MQ=255) atatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCt > 1:4401188‑M2/30‑50 (MQ=255) aaaCAGGTTCGGAAAACGTTTGCGTTTTTTTTGCCGCAGGTCAATTccc < 2:4536945/49‑1 (MQ=255) aaaCAGGTTCGGAAAACGTTTGCGTTTTTTTTGCCGCAGGTCAATTCCCt < 2:5035381/50‑1 (MQ=255) atttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCttt > 1:4036150‑M2/28‑50 (MQ=255) tttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCtttt > 1:146153‑M2/27‑50 (MQ=255) tttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCttt < 2:4806328‑M2/23‑1 (MQ=255) cAGGTTCGGAAAACGTTTGCGTTTTTTTTGCCGCAGGTCAATTCCCtttt < 2:1559895/50‑1 (MQ=255) ttacggagagatcaggatggtaacgTTTGCCGCAGGTCAATTCCCTTTTg > 2:2870166‑M2/26‑50 (MQ=255) tacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTgg > 2:1728503‑M2/25‑50 (MQ=255) tacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTg < 1:4417528‑M2/25‑1 (MQ=255) ggTTCGGAAAACGTTTGCGTTTTTTTTGCCGCAGGTCAATTCCCTTTTgg < 2:2960297/50‑1 (MQ=255) acgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTgg < 2:5097195‑M2/26‑1 (MQ=255) acgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGt > 1:2735111‑M2/24‑50 (MQ=255) cgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTc > 1:3141028‑M2/23‑50 (MQ=255) cgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTc < 2:4356856‑M2/28‑1 (MQ=255) cgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTc > 2:3533487‑M2/23‑50 (MQ=255) tCGGAAAACGTTTGCGTTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTcc > 1:4533497/1‑50 (MQ=255) gaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc > 2:3219327‑M2/22‑50 (MQ=255) gaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc < 2:4233435‑M2/29‑1 (MQ=255) gaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc > 1:5057813‑M2/22‑50 (MQ=255) gaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc > 2:4425308‑M2/22‑50 (MQ=255) gaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc < 1:4678636‑M2/29‑1 (MQ=255) gaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc > 2:2246540‑M2/22‑50 (MQ=255) ggAAAACGTTTGCGTTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCg < 2:4088191/49‑1 (MQ=255) agagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCg > 1:2087633‑M2/20‑49 (MQ=255) agagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCg > 2:2035602‑M2/20‑49 (MQ=255) agagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCg > 2:3050987‑M2/20‑49 (MQ=255) agagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGa < 2:4987300‑M2/31‑1 (MQ=255) gagatcaggatgataacgTTTGCCGCAGGACAATTCTCTCTTGGTCCGaa > 1:4817081‑M2/19‑50 (MQ=255) agatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAAc > 1:114747‑M2/18‑50 (MQ=255) agatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAAc > 2:3984491‑M2/18‑50 (MQ=255) agatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAAc > 1:195835‑M2/18‑50 (MQ=255) agatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAAc < 2:1756720‑M2/33‑1 (MQ=255) gatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACt < 2:2553201‑M2/34‑1 (MQ=255) gatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACt < 1:2417252‑M2/34‑1 (MQ=255) gatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACt > 2:4755600‑M2/17‑50 (MQ=255) gatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACt > 1:1016541‑M2/17‑50 (MQ=255) atcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTc > 1:2889986‑M2/16‑50 (MQ=255) atcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTc > 2:3625599‑M2/16‑50 (MQ=255) tcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCg > 1:3099148‑M2/15‑50 (MQ=255) caggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCg > 1:2120492‑M2/14‑49 (MQ=255) caggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCg > 2:629875‑M2/14‑49 (MQ=255) aggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGca > 1:4532220‑M2/13‑50 (MQ=255) aggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGca > 1:3484137‑M2/13‑50 (MQ=255) aggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGca > 2:3852631‑M2/13‑50 (MQ=255) aggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGc < 1:79636‑M2/37‑1 (MQ=255) gatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGcaca > 1:1859062‑M2/11‑50 (MQ=255) atgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGcaca > 2:5293493‑M2/10‑49 (MQ=255) atgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGcaca > 1:4248005‑M2/10‑49 (MQ=255) atgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGcaca > 1:2574481‑M2/10‑49 (MQ=255) atgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACat < 1:2502503‑M2/41‑1 (MQ=255) gCGTTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACat < 1:880509/49‑1 (MQ=255) gTTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTTCGAACTCGCATataa > 2:4005086/1‑49 (MQ=39) ataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACataa > 2:1872835‑M2/7‑49 (MQ=255) ataaccTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACataa > 2:308521‑M2/7‑49 (MQ=255) aacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATAc > 1:3144041‑M2/5‑50 (MQ=255) acgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACg < 2:914346‑M2/47‑1 (MQ=255) acgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACg < 1:4140010‑M2/47‑1 (MQ=255) acgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACg < 2:2269037‑M2/47‑1 (MQ=255) cgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGc > 1:2473097‑M2/3‑50 (MQ=255) gTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGcc > 1:1454022‑M2/2‑50 (MQ=255) gTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGcc > 1:4246198‑M2/2‑50 (MQ=255) tttGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGccc > 1:3984717/1‑50 (MQ=255) tttGCCGCAGGTCAATTCCCTTTTGGTCCGAAATCGCACATAATACTccc > 2:5005345/1‑50 (MQ=255) | AGGAGCAAAATCTGCCCTGAAACAGGTTCGGAAAACGTTTGCGTTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCC > NC_000913/1004638‑1004735 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |