| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1129396 | 8 (0.070) | 98 (0.890) | 66/98 | 0.0 | 90.7% | intergenic (+22/+18) | murJ/flgN | putative lipid II flippase MurJ/flagellar biosynthesis protein FlgN |
| ? | NC_000913 | 1140988 = | 12 (0.110) | intergenic (+2/+194) | flgL/rne | flagellar hook‑filament junction protein 2/ribonuclease E | |||||
Only 100 of 107 total aligned reads displayed.
TAAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGCAGGCCGGAGATAATCTTCAGATCGAAATCTTTTTACCGCCGCGATGG > NC_000913/1129347‑1129444 | tAAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCtgcagtg > 2:5337670/1‑50 (MQ=255) aaaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGt > 2:5206460‑M1/1‑49 (MQ=255) aaaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGt > 2:2104790‑M1/1‑49 (MQ=255) aaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGtt < 1:1061439‑M1/50‑3 (MQ=255) aGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttc < 2:3439798‑M1/50‑4 (MQ=255) aGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttc > 1:998099‑M1/1‑47 (MQ=255) gAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcg > 1:2072991‑M1/1‑46 (MQ=255) gAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcg < 2:795778‑M1/50‑5 (MQ=255) gAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGCAgg < 1:79052/50‑1 (MQ=255) aaTTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgc > 2:461993‑M1/1‑45 (MQ=255) aTTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgct < 1:1694573‑M1/50‑7 (MQ=255) tttGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctt > 2:2373291‑M1/1‑43 (MQ=255) tttGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctt > 1:3924106‑M1/1‑43 (MQ=255) tttGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctt < 1:3121049‑M1/50‑8 (MQ=255) tttGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGCAGGCCg > 1:4601969/1‑50 (MQ=255) ttGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctt > 1:3837266‑M1/1‑42 (MQ=255) tGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgcttt < 1:5391411‑M1/49‑9 (MQ=255) tGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGctcgcttt > 2:2640479‑M1/1‑41 (MQ=255) gCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgcttta > 1:558878‑M1/1‑40 (MQ=255) gCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgcttta < 1:3394446‑M1/49‑10 (MQ=255) cccGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaa < 1:674030‑M1/50‑12 (MQ=255) cccGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaa < 1:3290945‑M1/50‑12 (MQ=255) cccGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaa < 2:1880449‑M1/50‑12 (MQ=255) cccGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaa < 1:3456117‑M1/50‑12 (MQ=255) ccgccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaa < 2:1022926‑M1/50‑13 (MQ=255) cgccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaac < 1:128158‑M1/50‑14 (MQ=255) gccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaaca > 2:3568985‑M1/1‑36 (MQ=255) ccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacat < 2:1210692‑M1/50‑16 (MQ=255) ccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacat < 1:2084673‑M1/50‑16 (MQ=255) cgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacata > 2:3482987‑M1/1‑34 (MQ=255) ggACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat > 1:2644385‑M1/1‑33 (MQ=255) ggACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat > 1:4114197‑M1/1‑33 (MQ=255) gACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatc < 1:100579‑M1/50‑19 (MQ=255) gACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatc < 1:2578516‑M1/50‑19 (MQ=255) gACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatc < 1:913748‑M1/50‑19 (MQ=255) gACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat > 1:383539‑M1/1‑32 (MQ=255) gACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat > 1:3144999‑M1/1‑32 (MQ=255) aCGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatca < 1:3849903‑M1/50‑20 (MQ=255) aCGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatca < 2:2019753‑M1/50‑20 (MQ=255) aCGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatca < 1:3959828‑M1/50‑20 (MQ=255) aCGGTGTAACAATGCATTCCGGCCTGCAGTGCAGGCCGGAGATAATCTTc < 1:3440436/50‑1 (MQ=255) cGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcat > 1:928833‑M1/1‑30 (MQ=255) cGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcat < 1:3476983‑M1/50‑21 (MQ=255) ggTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatg < 2:5058883‑M1/50‑22 (MQ=255) ggTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcat > 1:4821896‑M1/1‑29 (MQ=255) ggTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcat > 1:3924350‑M1/1‑29 (MQ=255) ggTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcat > 1:2807722‑M1/1‑29 (MQ=255) gtgtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatg > 1:3517808‑M1/1‑28 (MQ=255) tgtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaa < 1:3973953‑M1/50‑24 (MQ=255) tgtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaa < 2:2184334‑M1/50‑24 (MQ=255) tgtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatga > 2:3317821‑M1/1‑27 (MQ=255) tgtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatga > 1:5238280‑M1/1‑27 (MQ=255) gtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaa > 2:4912831‑M1/1‑26 (MQ=255) tAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaa < 1:3793415‑M1/49‑25 (MQ=255) aaCAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaact > 2:3964743‑M1/1‑24 (MQ=255) aCAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactg < 2:1953545‑M1/50‑28 (MQ=255) aCAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaact < 1:3462189‑M1/49‑27 (MQ=255) cAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgg < 1:3996025‑M1/50‑29 (MQ=255) aaTGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactggg > 2:3719972‑M1/1‑21 (MQ=255) aaTGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactggg < 1:3178418‑M1/50‑30 (MQ=255) aaTGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactggg < 1:2353089‑M1/50‑30 (MQ=255) aTGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggt < 2:1689691‑M1/50‑31 (MQ=255) tGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggta < 2:617350‑M1/50‑32 (MQ=255) gCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtat > 2:103412‑M1/1‑18 (MQ=255) cATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatg > 1:959849‑M1/1‑17 (MQ=255) cATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatg < 1:2523313‑M1/50‑34 (MQ=255) cATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatg > 2:5344640‑M1/1‑17 (MQ=255) cATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtat < 2:4434249‑M1/49‑33 (MQ=255) cATTCCGGCCTGCAGTGctcgctttaaaacatatcatgaaactgggtatg > 1:1280205‑M1/1‑17 (MQ=255) aTTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgt > 2:1276912‑M1/1‑16 (MQ=255) ttCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgtt < 2:1345564‑M1/50‑36 (MQ=255) ttCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgtt < 2:5089898‑M1/50‑36 (MQ=255) ttCCGGCCTGCAGTGCAGGCCGGAGATAATCTTCAGATCGAAATCtttt > 1:1543594/1‑49 (MQ=255) ccGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgtttt > 1:178754‑M1/1‑13 (MQ=255) ccGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttt < 2:4084438‑M1/49‑37 (MQ=255) ccGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttt < 2:537722‑M1/49‑37 (MQ=255) ccGGCCTGCAGTGCAGGCCGGAGATAATCTTCAGATCGAAATCTTTTTAc > 2:804020/1‑50 (MQ=255) cGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttg < 1:3076723‑M1/50‑39 (MQ=255) cGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttg < 1:3331808‑M1/50‑39 (MQ=255) cGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttg < 2:5051327‑M1/50‑39 (MQ=255) cGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgtttt < 2:5051893‑M1/49‑38 (MQ=255) cGGCCTGCAGTGCAGGCCGGAGATAATCTTCAGATCGAAATCTTTTTAc < 2:3086837/49‑1 (MQ=255) ggCCTGCAGTGCAGGCCGGAGATAATCTTCAGATCGAAATCTTTTTAccg < 2:4268769/50‑1 (MQ=255) gCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtc > 1:4458640‑M1/1‑10 (MQ=255) ccTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtct < 2:3020019‑M1/50‑42 (MQ=255) ccTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtct > 1:646396‑M1/1‑9 (MQ=255) ccTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtct < 1:681771‑M1/50‑42 (MQ=255) ccTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtct < 2:258580‑M1/50‑42 (MQ=255) cTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctg > 2:5007142‑M1/1‑8 (MQ=255) cTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctg > 1:1688766‑M1/1‑8 (MQ=255) tGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgc > 1:3522723‑M1/1‑7 (MQ=255) gCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcc > 1:2672866‑M1/1‑6 (MQ=255) cAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcct > 2:2736029‑M1/1‑5 (MQ=255) agtgcagGCCGGAGATAATCTTCAGATCGAAATCTTTTTTCCGCCGCGAt > 2:4522435/1‑50 (MQ=255) aGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctg < 2:4257447‑M1/50‑47 (MQ=255) gtgttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctgc < 1:836383‑M1/50‑48 (MQ=255) gtgttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctgc < 2:2379924‑M1/50‑48 (MQ=255) gtgttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctgc > 2:5178619‑M1/1‑3 (MQ=255) gtgttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctgc > 1:278424‑M1/1‑3 (MQ=255) tgttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctgct < 1:807449‑M1/50‑49 (MQ=255) | TAAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGCAGGCCGGAGATAATCTTCAGATCGAAATCTTTTTACCGCCGCGATGG > NC_000913/1129347‑1129444 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |