| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1129396 | 8 (0.070) | 98 (0.890) | 66/98 | 0.0 | 90.7% | intergenic (+22/+18) | murJ/flgN | putative lipid II flippase MurJ/flagellar biosynthesis protein FlgN |
| ? | NC_000913 | 1140988 = | 12 (0.110) | intergenic (+2/+194) | flgL/rne | flagellar hook‑filament junction protein 2/ribonuclease E | |||||
Only 100 of 111 total aligned reads displayed.
GCATTTACCGATATGCAGGGATTGTCGCTCTTCCAGCTCAGCAAATAATTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCTCT > NC_000913/1140939‑1141037 | aaagaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgt > 2:2104790‑M2/50‑50 (MQ=255)aaagaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgt > 2:5206460‑M2/50‑50 (MQ=255) aagaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgtt < 1:1061439‑M2/2‑1 (MQ=255) agaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTc < 2:3439798‑M2/3‑1 (MQ=255) gaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCg > 1:2072991‑M2/47‑50 (MQ=255) gaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCg < 2:795778‑M2/4‑1 (MQ=255) aatttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGc > 2:461993‑M2/46‑50 (MQ=255) atttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCt < 1:1694573‑M2/6‑1 (MQ=255) tttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCtt > 1:3924106‑M2/44‑50 (MQ=255) tttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCtt > 2:2373291‑M2/44‑50 (MQ=255) tttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCtt < 1:3121049‑M2/7‑1 (MQ=255) ttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCtt > 1:5108172‑M2/43‑49 (MQ=255) ttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCtt > 1:3837266‑M2/43‑49 (MQ=255) ttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCtt > 2:1075064‑M2/43‑49 (MQ=255) tgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCttt < 1:5391411‑M2/8‑1 (MQ=255) tgcccgccggacggtgtaacaatgcattccggcctgcagtgCTCGCttt > 2:2640479‑M2/42‑49 (MQ=255) gcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTa < 1:3394446‑M2/9‑1 (MQ=255) cccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTaaa < 1:3290945‑M2/11‑1 (MQ=255) cccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTaaa < 1:3456117‑M2/11‑1 (MQ=255) cccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTaaa < 2:1880449‑M2/11‑1 (MQ=255) cccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTaaa < 1:674030‑M2/11‑1 (MQ=255) ccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTaaaa < 2:1022926‑M2/12‑1 (MQ=255) cgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAAc < 1:128158‑M2/13‑1 (MQ=255) gccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACa > 2:3568985‑M2/37‑50 (MQ=255) ccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACat < 2:1210692‑M2/15‑1 (MQ=255) ccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACat < 1:2084673‑M2/15‑1 (MQ=255) cggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACata > 2:3482987‑M2/35‑50 (MQ=255) cAGGGATTGTCGCTCTTCCAGCTCAGCAAATAATTTCGCTTTAAAACata < 2:2553696/50‑1 (MQ=255) ggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACatat > 1:4114197‑M2/34‑50 (MQ=255) ggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACatat > 1:2644385‑M2/34‑50 (MQ=255) gacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACatat > 1:3144999‑M2/33‑49 (MQ=255) gacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACatat > 1:383539‑M2/33‑49 (MQ=255) gacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATc < 1:2578516‑M2/18‑1 (MQ=255) gacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATc < 1:913748‑M2/18‑1 (MQ=255) gacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATc < 1:100579‑M2/18‑1 (MQ=255) acggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCa < 1:3849903‑M2/19‑1 (MQ=255) cggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCAt > 1:928833‑M2/31‑50 (MQ=255) ggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCAt > 1:2707161‑M2/30‑49 (MQ=255) ggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCAt > 1:3924350‑M2/30‑49 (MQ=255) ggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCAt > 1:4821896‑M2/30‑49 (MQ=255) ggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATg < 2:5058883‑M2/21‑1 (MQ=255) gtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATg > 1:3517808‑M2/29‑49 (MQ=255) tgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGaa < 1:3973953‑M2/23‑1 (MQ=255) tgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGaa < 2:2184334‑M2/23‑1 (MQ=255) tgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGa > 1:5238280‑M2/28‑49 (MQ=255) tgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGa > 2:3317821‑M2/28‑49 (MQ=255) tGTCGCTCTTCCAGCTCAGCAAATAATTTCGCTTTAAAACATATCATGa > 1:5277770/1‑49 (MQ=255) gtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGaaa > 2:4912831‑M2/27‑50 (MQ=255) taacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGaaa < 1:3793415‑M2/24‑1 (MQ=255) tCGCTCTTCCAGCTCAGCAAATAATTTCGCTTTAAAACATATCATGaaa < 1:2553798/49‑1 (MQ=255) tCGCTCTTCCAGCTCAGCAAATAATTTCGCTTTAAAACATATCATGAAAc < 1:199049/50‑1 (MQ=255) aacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACt > 2:3964743‑M2/25‑50 (MQ=255) acaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACt < 1:3462189‑M2/26‑1 (MQ=255) acaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTg < 2:1953545‑M2/27‑1 (MQ=255) caatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTgg < 1:3996025‑M2/28‑1 (MQ=255) aatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTggg < 1:3178418‑M2/29‑1 (MQ=255) aatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTggg < 1:2353089‑M2/29‑1 (MQ=255) aatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTggg > 2:3719972‑M2/22‑50 (MQ=255) ctTCCAGCTCAGCAAATAATTTCGCTTTAAAACATATCATGAAACTggg > 2:88886/1‑49 (MQ=255) atgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGt < 2:1689691‑M2/30‑1 (MQ=255) tgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTa < 2:617350‑M2/31‑1 (MQ=255) gcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTAt > 2:103412‑M2/19‑50 (MQ=255) cattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTAt < 2:4434249‑M2/32‑1 (MQ=255) cattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATg > 1:959849‑M2/18‑50 (MQ=255) cattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATg > 2:5344640‑M2/18‑50 (MQ=255) cattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATg < 1:2523313‑M2/33‑1 (MQ=255) cattccggcctgcagtgCTCGCTTTAAAACATATCATGAAACTGGGTATg > 1:1280205‑M2/18‑50 (MQ=255) cAGCTCAGCAAATAATTTCGCTTTAAAACATATCATGAAACTGGGTATGt < 1:2799083/50‑1 (MQ=255) cAGCTCAGCAAATAATTTCGCTTTAAAACATATCATGAAACTGGGTATGt > 2:3817626/1‑50 (MQ=255) attccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGt > 2:1276912‑M2/17‑50 (MQ=255) ttccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGtt < 2:1345564‑M2/35‑1 (MQ=255) aGCTCAGCAAATAATTTCGCTTTAAAACATATCATGAAACTGGGTATGtt > 2:2623688/1‑50 (MQ=255) ccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGtttt > 1:178754‑M2/14‑50 (MQ=255) ccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGttt < 2:537722‑M2/36‑1 (MQ=255) ccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGttt < 2:4084438‑M2/36‑1 (MQ=255) cTCAGCAAATAATTTCGCTTTAAAACATATCATGAAACTGGGTATGtttt > 2:946622/1‑50 (MQ=255) cggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGtttt < 2:5051893‑M2/37‑1 (MQ=255) cggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTg < 1:3076723‑M2/38‑1 (MQ=255) cggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTg < 1:3331808‑M2/38‑1 (MQ=255) cggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTg < 2:5051327‑M2/38‑1 (MQ=255) gcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTc > 1:4458640‑M2/11‑50 (MQ=255) gcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTc < 2:4763555‑M2/40‑1 (MQ=255) cctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTct < 2:3020019‑M2/41‑1 (MQ=255) cctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTct < 2:258580‑M2/41‑1 (MQ=255) cctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTct < 1:681771‑M2/41‑1 (MQ=255) cctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTct > 1:646396‑M2/10‑50 (MQ=255) ctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctg > 1:1688766‑M2/9‑50 (MQ=255) ctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctg < 1:3518446‑M2/42‑1 (MQ=255) ctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctg > 2:5007142‑M2/9‑50 (MQ=255) tgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgc > 1:3522723‑M2/8‑50 (MQ=255) aaaTAATTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgc < 1:971089/50‑1 (MQ=255) gcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcc > 1:2672866‑M2/7‑50 (MQ=255) aataatTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcc > 2:5182615/1‑50 (MQ=255) cagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcct > 2:2736029‑M2/6‑50 (MQ=255) agtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcctg < 2:4257447‑M2/46‑1 (MQ=255) gtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcctgc > 2:5178619‑M2/4‑50 (MQ=255) gtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcctgc < 1:836383‑M2/47‑1 (MQ=255) gtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcctgc < 2:2379924‑M2/47‑1 (MQ=255) gtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcctgc > 1:278424‑M2/4‑50 (MQ=255) tgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGct < 1:807449‑M2/48‑1 (MQ=255) | GCATTTACCGATATGCAGGGATTGTCGCTCTTCCAGCTCAGCAAATAATTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCTCT > NC_000913/1140939‑1141037 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |