| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1872029 | 7 (0.060) | 130 (1.210) | 66/96 | 0.0 | 93.6% | intergenic (+169/‑12) | cdgI/dgcJ | putative c‑di‑GMP binding protein CdgI/putative diguanylate cyclase DgcJ |
| ? | NC_000913 | 1873467 = | 11 (0.100) | coding (1427/1491 nt) | dgcJ | putative diguanylate cyclase DgcJ | |||||
Only 100 of 143 total aligned reads displayed.
AGGCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGTGCCATTTATCATGAAATTGCACCATAGAATGCTCCGGCATTTTATCG > NC_000913/1871980‑1872077 | aGGCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAG < 1:2456372‑M1/50‑1 (MQ=255)aGGCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAG < 1:3504411‑M1/50‑1 (MQ=255) ggCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGa < 2:3325620‑M1/50‑2 (MQ=255) ggCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGa < 1:351648‑M1/50‑2 (MQ=255) gCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGat < 2:1522269‑M1/50‑3 (MQ=255) gCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGat < 2:1239835‑M1/50‑3 (MQ=255) ccGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatg < 1:3705171‑M1/50‑4 (MQ=255) cGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgc < 1:2730151‑M1/50‑5 (MQ=255) cGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgc > 2:1904006‑M1/1‑46 (MQ=255) cGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgc > 2:4127714‑M1/1‑46 (MQ=255) gCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcg > 1:5191626‑M1/1‑45 (MQ=255) gCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGTGCCa < 1:243193/50‑1 (MQ=255) cAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgt < 2:2624538‑M1/50‑7 (MQ=255) cAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcg > 2:2791819‑M1/1‑44 (MQ=255) aaTCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgta > 2:5139210‑M1/1‑43 (MQ=255) aaTCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgta > 1:4173173‑M1/1‑43 (MQ=255) aTCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtat < 2:4784129‑M1/50‑9 (MQ=255) tCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtata < 2:1368789‑M1/50‑10 (MQ=255) tCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtata < 1:2457488‑M1/50‑10 (MQ=255) tCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtata < 2:3859638‑M1/50‑10 (MQ=255) tCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtata < 2:5333269‑M1/50‑10 (MQ=255) gAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaa < 2:1896039‑M1/50‑12 (MQ=255) gAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataa < 1:5138694‑M1/49‑11 (MQ=255) gAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGTGCCATTTAt < 1:3105286/49‑1 (MQ=255) aaCTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaag > 2:2739632‑M1/1‑38 (MQ=255) aaCTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaag > 2:1176605‑M1/1‑38 (MQ=255) aCTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagc < 1:2713670‑M1/50‑14 (MQ=255) aCTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagc > 2:1930010‑M1/1‑37 (MQ=255) aCTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagc > 2:2305001‑M1/1‑37 (MQ=255) aCTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagc > 1:4506907‑M1/1‑37 (MQ=255) cTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagct > 1:1020010‑M1/1‑36 (MQ=255) tttATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagctt > 1:5246617‑M1/1‑35 (MQ=255) tATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttc < 2:318634‑M1/49‑17 (MQ=255) aTCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttcc < 2:2574535‑M1/49‑18 (MQ=255) aTCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttcc > 1:755849‑M1/1‑32 (MQ=255) gTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgag < 2:772592‑M1/50‑24 (MQ=255) gTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgag > 2:2733836‑M1/1‑27 (MQ=255) gTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgag < 2:2152570‑M1/50‑24 (MQ=255) gTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgag < 1:2271292‑M1/50‑24 (MQ=255) gTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatga < 1:290836‑M1/49‑23 (MQ=255) gTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatga < 2:844132‑M1/49‑23 (MQ=255) gTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatga < 1:5231628‑M1/49‑23 (MQ=255) gTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatg < 1:379160‑M1/48‑22 (MQ=255) gTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatg < 1:556486‑M1/48‑22 (MQ=255) gTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatg < 1:1472416‑M1/48‑22 (MQ=255) gTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgat < 2:1047795‑M1/47‑21 (MQ=255) gTTTTCTCGTTTCACTAACCGAAGGAGTGCCATTTATCATGAAATTGCAc < 2:2914132/50‑1 (MQ=255) gTTTTCTCGGTTCACTAACCGAAGGAGaggcgtataaagcttccgat < 2:3446154‑M1/47‑21 (MQ=255) ttttCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagc < 1:2153692‑M1/50‑25 (MQ=255) tttCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcg > 1:2279230‑M1/1‑25 (MQ=255) ttCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgt > 2:3050535‑M1/1‑24 (MQ=255) tctcGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgt < 1:1018222‑M1/49‑27 (MQ=255) tctcGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgt < 2:2432526‑M1/49‑27 (MQ=255) tctcGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgt < 1:591573‑M1/49‑27 (MQ=255) ctcGTTTCGCTAACCGAAGGAGatgcgtataaagcttccgatgagcgtt < 1:4535846‑M1/49‑28 (MQ=255) cGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgttta > 1:1498694‑M1/1‑20 (MQ=255) gTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttata > 1:465911‑M1/1‑19 (MQ=255) gTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttat < 1:2091184‑M1/49‑31 (MQ=255) tttCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatat > 2:4758480‑M1/1‑18 (MQ=255) tttCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatat > 1:368282‑M1/1‑18 (MQ=255) ttCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatg > 1:4450638‑M1/1‑17 (MQ=255) tCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatg < 2:1468841‑M1/49‑34 (MQ=255) cACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgt > 1:3020313‑M1/1‑15 (MQ=255) cACTAACCGAAGGAGTGCCATTTATCATGAAATTGCACCATAGAATGCt < 1:5194816/49‑1 (MQ=255) aCTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtca < 2:5115757‑M1/50‑37 (MQ=255) aCTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtca < 1:4214269‑M1/50‑37 (MQ=255) aCTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtc < 2:4853674‑M1/49‑36 (MQ=255) aCTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtc < 1:1378682‑M1/49‑36 (MQ=255) tAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaa > 2:201384‑M1/1‑12 (MQ=255) tAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaa > 1:5086651‑M1/1‑12 (MQ=255) aCCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataa < 1:811573‑M1/50‑41 (MQ=255) aCCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataa < 2:4515972‑M1/50‑41 (MQ=255) aCCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataa < 1:358275‑M1/50‑41 (MQ=255) aCCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataa < 1:1928062‑M1/50‑41 (MQ=255) aCCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataa < 1:21471‑M1/50‑41 (MQ=255) aCCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataa < 1:4492430‑M1/50‑41 (MQ=255) aCCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaata < 1:4577697‑M1/49‑40 (MQ=255) aCCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaata < 1:3010768‑M1/49‑40 (MQ=255) aCCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaata < 1:3842118‑M1/49‑40 (MQ=255) aCCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaat < 2:3564150‑M1/48‑39 (MQ=255) cGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataagc < 1:5038961‑M1/50‑43 (MQ=255) cGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataagc < 1:5182423‑M1/50‑43 (MQ=255) aaGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataagcag < 2:1035840‑M1/50‑45 (MQ=255) aaGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataagcag < 1:4300027‑M1/50‑45 (MQ=255) aaGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataagcag < 1:4967844‑M1/50‑45 (MQ=255) aaGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataag > 2:3297929‑M1/1‑6 (MQ=255) aaGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataag > 2:1303409‑M1/1‑6 (MQ=255) aGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataagcaga < 1:173516‑M1/50‑46 (MQ=255) aGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataagcag > 2:3955592‑M1/1‑5 (MQ=255) aGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataagcag > 2:1449236‑M1/1‑5 (MQ=255) aGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataagcag > 1:2614157‑M1/1‑5 (MQ=255) aGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataagcag > 1:2045433‑M1/1‑5 (MQ=255) ggAGatgcgtataaagcttccgatgagcgtttatatgtcaataagcagaa > 2:1453862‑M1/1‑4 (MQ=255) ggAGatgcgtataaagcttccgatgagcgtttatatgtcaataagcagaa < 1:1050844‑M1/50‑47 (MQ=255) gagatgcgtataaagcttccgatgagcgtttatatgtcaataagcagaa > 1:5263782‑M1/1‑3 (MQ=255) gagatgcgtataaagcttccgatgagcgtttatatgtcaataagcagaa > 1:4694826‑M1/1‑3 (MQ=255) gagatgcgtataaagcttccgatgagcgtttatatgtcaataagcagaa > 2:5234418‑M1/1‑3 (MQ=255) gatgcgtataaagcttccgatgagcgtttatatgtcaataagcagaaca > 1:419281‑M1/1‑1 (MQ=255) gatgcgtataaagcttccgatgagcgtttatatgtcaataagcagaaca > 2:1659966‑M1/1‑1 (MQ=255) gatgcgtataaagcttccgatgagcgtttatatgtcaataagcagaaca > 2:1369390‑M1/1‑1 (MQ=255) | AGGCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGTGCCATTTATCATGAAATTGCACCATAGAATGCTCCGGCATTTTATCG > NC_000913/1871980‑1872077 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |