| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2286400 | 9 (0.080) | 139 (1.270) | 75/98 | 0.0 | 93.0% | pseudogene (2515/2525 nt) | yejO | adhesin‑like autotransporter YejO |
| ? | NC_000913 | 2290181 = | 12 (0.110) | intergenic (‑1/‑319) | yejO/narP | adhesin‑like autotransporter YejO/DNA‑binding transcriptional dual regulator NarP | |||||
Only 100 of 151 total aligned reads displayed.
ACAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGACCACACCCGCCTGAGTATTCCACGGCGATTCTACCCCTGCGCCAT > NC_000913/2286351‑2286448 | aCAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTCTCAGAACGTcc > 2:5014394/1‑50 (MQ=255)aCAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTcc < 1:643212/50‑1 (MQ=255) cAGACCGTGACGCATCACAGCCTGTTTATTTTCTGTTATCAGAGCGTCCt < 2:184833‑M1/50‑2 (MQ=255) cAGACCGTGACACATCCCAGCCTGTTTATTTTCTGTTATCACAACGTCCt < 1:4647757‑M1/50‑2 (MQ=255) cAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt < 1:16622‑M1/50‑2 (MQ=255) cAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt > 2:3276451‑M1/1‑49 (MQ=255) aGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtg < 1:3420617‑M1/50‑3 (MQ=255) aGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtg < 1:2353932‑M1/50‑3 (MQ=255) aGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtg < 2:19765‑M1/50‑3 (MQ=255) aGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt > 2:2220781‑M1/1‑48 (MQ=255) aGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt > 2:540398‑M1/1‑48 (MQ=255) gACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtga < 1:4076580‑M1/50‑4 (MQ=255) gACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtga < 1:1007588‑M1/50‑4 (MQ=255) gACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt > 1:3745723‑M1/1‑47 (MQ=255) gACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt > 1:4531700‑M1/1‑47 (MQ=255) gACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGa < 2:4798087/50‑1 (MQ=255) aCCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgag > 2:28618‑M1/1‑46 (MQ=255) aCCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgag < 1:429925‑M1/50‑5 (MQ=255) ccGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagc > 2:4714843‑M1/1‑45 (MQ=255) cGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagct < 1:3452513‑M1/50‑7 (MQ=255) gTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctt > 2:3374504‑M1/1‑43 (MQ=255) tGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagcttt < 1:3298370‑M1/50‑9 (MQ=255) gACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagcttt > 1:4929926‑M1/1‑41 (MQ=255) acacATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttc < 1:2735274‑M1/49‑10 (MQ=255) acacATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttc < 1:1049128‑M1/49‑10 (MQ=255) cacaTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcat > 1:3967‑M1/1‑39 (MQ=255) acaTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatc < 2:2531577‑M1/50‑13 (MQ=255) caTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcc < 2:583407‑M1/50‑14 (MQ=255) aTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcct < 1:5204006‑M1/50‑15 (MQ=255) aTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcc > 1:4015257‑M1/1‑36 (MQ=255) tCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatccta < 2:1201067‑M1/50‑16 (MQ=255) cacaGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctat > 2:2339892‑M1/1‑34 (MQ=255) cacaGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctat > 1:414764‑M1/1‑34 (MQ=255) acaGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatg < 1:1850986‑M1/50‑18 (MQ=255) acaGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctat < 1:2823488‑M1/49‑17 (MQ=255) caGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatga < 2:4706536‑M1/50‑19 (MQ=255) caGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatg > 1:1185318‑M1/1‑32 (MQ=255) caGCCTGTTTATTTTCTGTTATCAGAACGTCCAGACCACACCCGCCTGAg > 2:3145728/1‑50 (MQ=255) caGCCTGTTTATTTTCTGTTATCAGAACGTCCAGACCACACCCGCCTGAg > 2:5024754/1‑50 (MQ=255) aGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatga > 1:1387083‑M1/1‑31 (MQ=255) aGCCTGTTTATTTTCTGTTATCAGAACGTCCAGACCACACCCGCCTGAGt < 1:3987493/50‑1 (MQ=255) gCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaa < 1:2477542‑M1/50‑21 (MQ=255) ccTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaat < 1:153676‑M1/50‑22 (MQ=255) ccTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaat > 2:1795429‑M1/1‑29 (MQ=255) cTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaat > 1:1075646‑M1/1‑28 (MQ=255) cTGTTTATTTTCTGTTATCAGAACGTCCAGACCACACCCGCCTGAGTAtt > 1:5182329/1‑50 (MQ=255) tGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaatt > 2:1738432‑M1/1‑27 (MQ=255) tttATTTTCTGTTATCAGAACGTCCtgagctttcatcctgtgaaattaat < 1:2206555‑M1/50‑26 (MQ=255) tttATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaat < 2:4536559‑M1/50‑26 (MQ=255) tttATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaa < 1:4896294‑M1/49‑25 (MQ=255) tttATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaa < 2:533968‑M1/49‑25 (MQ=255) tttATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaatta < 1:814900‑M1/48‑24 (MQ=255) tATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaatt < 1:379938‑M1/49‑27 (MQ=255) tATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaatt < 2:2368384‑M1/49‑27 (MQ=255) tATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaatt < 2:4465960‑M1/49‑27 (MQ=255) tATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaatt < 1:2681790‑M1/49‑27 (MQ=255) aTTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgc > 1:3652334‑M1/1‑22 (MQ=255) aTTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattg < 1:2179934‑M1/49‑28 (MQ=255) ttttCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgct < 1:2173715‑M1/50‑30 (MQ=255) ttttCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgc < 1:1570208‑M1/49‑29 (MQ=255) tttCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctg > 2:144511‑M1/1‑20 (MQ=255) ttCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgt > 2:3386434‑M1/1‑19 (MQ=255) tCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgt < 2:4624578‑M1/49‑32 (MQ=255) tCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgt > 2:4061525‑M1/1‑18 (MQ=255) tCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgt < 2:2575848‑M1/49‑32 (MQ=255) tCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgt > 1:2368199‑M1/1‑18 (MQ=255) cTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgtt < 2:4805549‑M1/49‑33 (MQ=255) cTGTTATCAGAACGTCCAGACCACCCCCGCCTGAGTATTCCACTGCGAt < 2:4624993/49‑1 (MQ=255) tGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgtta > 2:3390420‑M1/1‑16 (MQ=255) gTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaa > 1:1484954‑M1/1‑15 (MQ=255) gTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaa > 2:1947799‑M1/1‑15 (MQ=255) gTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaa > 1:900308‑M1/1‑15 (MQ=255) ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaa < 2:4164039‑M1/48‑35 (MQ=255) ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaa > 2:1773499‑M1/1‑14 (MQ=255) ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaa < 2:164255‑M1/48‑35 (MQ=255) ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgtta < 2:336088‑M1/47‑34 (MQ=255) aTCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaag > 1:1631642‑M1/1‑12 (MQ=255) aTCAGAACGTCCAGACCACACCCGCCTGAGTATTCCACGGCGATTCTAcc > 2:5288061/1‑50 (MQ=255) tCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagca < 2:1984136‑M1/50‑40 (MQ=255) tCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagc < 1:1373976‑M1/49‑39 (MQ=255) cAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcat > 2:4026876‑M1/1‑10 (MQ=255) cAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcat > 2:2189517‑M1/1‑10 (MQ=255) aGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcatt > 1:4173593‑M1/1‑9 (MQ=255) aGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcatt > 2:277192‑M1/1‑9 (MQ=255) aGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcatt > 2:1327822‑M1/1‑9 (MQ=255) aGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcatt < 1:963294‑M1/50‑42 (MQ=255) aaCGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgg > 1:709479‑M1/1‑7 (MQ=255) aaCGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgg > 1:2544733‑M1/1‑7 (MQ=255) cGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggt < 2:1398138‑M1/50‑46 (MQ=255) cGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattggg > 1:4337901‑M1/1‑5 (MQ=255) gTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggta > 1:2786706‑M1/1‑4 (MQ=255) gTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggta > 1:51071‑M1/1‑4 (MQ=255) gTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggta > 2:4219320‑M1/1‑4 (MQ=255) gTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggta < 2:5104742‑M1/50‑47 (MQ=255) gTCCAGACCACACCCGCCTGAGTATTCCACGGCGATTCTACCCCTgcgc > 1:5094143/1‑49 (MQ=255) tCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggtac < 1:2298036‑M1/50‑48 (MQ=255) tCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggtac < 1:3720836‑M1/50‑48 (MQ=255) tCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggta > 2:2919569‑M1/1‑3 (MQ=255) cctgagctttcatcctatgaaattaattgctgttaaaagcattgggta > 1:3299970‑M1/1‑2 (MQ=255) ctgagctttcatcctatgaaattaattgctgttaaaagcattgggtaca < 2:2824399‑M1/49‑49 (MQ=255) | ACAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGACCACACCCGCCTGAGTATTCCACGGCGATTCTACCCCTGCGCCAT > NC_000913/2286351‑2286448 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |