| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2558698 | 11 (0.100) | 100 (1.100) | 62/82 | 0.0 | 91.2% | intergenic (‑19/‑160) | eutB/intZ | ethanolamine ammonia‑lyase subunit alpha/CPZ‑55 prophage; putative phage integrase IntZ |
| ? | NC_000913 | 2565489 = | 10 (0.110) | coding (1396/1404 nt) | eutA | reactivating factor for ethanolamine ammonia‑lyase EutBC | |||||
Only 100 of 137 total aligned reads displayed.
CATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGAATCGATGATTGGCATTTTTCACAGCATTCTAACAATCACGTTTCATCG > NC_000913/2558649‑2558747 | cATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAG < 2:1305607‑M1/50‑1 (MQ=255)cATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAG < 2:3998703‑M1/50‑1 (MQ=255) aTTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGg < 2:1354208‑M1/50‑2 (MQ=255) aTTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGg < 1:4698037‑M1/50‑2 (MQ=255) aTTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAG > 1:1513850‑M1/1‑49 (MQ=255) aTTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAG > 1:1832131‑M1/1‑49 (MQ=255) ttGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGga < 1:1354717‑M1/50‑3 (MQ=255) ttGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGg > 2:2209374‑M1/1‑48 (MQ=255) tGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGga > 1:5148314‑M1/1‑47 (MQ=255) gCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaa > 1:2599504‑M1/1‑46 (MQ=255) gCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaa < 1:3579428‑M1/49‑4 (MQ=255) ccGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaat < 2:889640‑M1/50‑6 (MQ=255) ccGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaat < 1:1058747‑M1/50‑6 (MQ=255) ccGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaa < 2:3814593‑M1/49‑5 (MQ=255) ccGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaa < 2:3162242‑M1/49‑5 (MQ=255) ccGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaa < 2:507993‑M1/49‑5 (MQ=255) cGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatg < 1:550174‑M1/50‑7 (MQ=255) cGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatg > 2:4083610‑M1/1‑44 (MQ=255) gAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgc > 1:3002110‑M1/1‑43 (MQ=255) gAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgc > 1:3558403‑M1/1‑43 (MQ=255) aaCAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgc > 2:3908103‑M1/1‑42 (MQ=255) aCAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcga < 2:2820768‑M1/50‑10 (MQ=255) aCAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcga < 2:676937‑M1/50‑10 (MQ=255) aCAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgc > 1:2165754‑M1/1‑41 (MQ=255) aCAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgc > 2:1428434‑M1/1‑41 (MQ=255) aaTGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagt > 1:4168872‑M1/1‑39 (MQ=255) aaTGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagt < 1:1494551‑M1/50‑12 (MQ=255) aTGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtg < 2:2109002‑M1/50‑13 (MQ=255) tgtgGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtga > 2:3530393‑M1/1‑37 (MQ=255) tgtgGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtga > 1:547971‑M1/1‑37 (MQ=255) tgGTCTTTAGTTTCATAAGTCGTTCCCTCAGGCAGgaaatgcgagtgatt > 1:4321782‑M1/1‑35 (MQ=255) tgGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatt < 2:5030773‑M1/50‑16 (MQ=255) tgGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatt > 2:3116475‑M1/1‑35 (MQ=255) tgGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatt < 2:2956572‑M1/50‑16 (MQ=255) tgGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgat < 2:741513‑M1/49‑15 (MQ=255) ggTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgattt > 2:847634‑M1/1‑34 (MQ=255) gTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttc < 2:3525510‑M1/50‑18 (MQ=255) gTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttc < 1:2465245‑M1/50‑18 (MQ=255) gTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgattt < 2:3744697‑M1/49‑17 (MQ=255) gTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgattt < 2:2211904‑M1/49‑17 (MQ=255) gTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgattt > 2:1102982‑M1/1‑33 (MQ=255) gTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgattt < 1:707961‑M1/49‑17 (MQ=255) gTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgattt < 2:4824815‑M1/49‑17 (MQ=255) gTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGAATCGCTGATTGGCAtt > 1:628226/1‑50 (MQ=255) tCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttca > 2:1939948‑M1/1‑32 (MQ=255) tCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttca < 1:4400166‑M1/50‑19 (MQ=255) tttAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcacc > 1:627572‑M1/1‑30 (MQ=255) ttAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccg > 1:1742180‑M1/1‑29 (MQ=255) tAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcac < 1:4535975‑M1/47‑20 (MQ=255) tAGTTTCATAAGTCGTTCCCTCAGGAAGAATCGATGATTGGCATTTTTca > 1:986320/1‑50 (MQ=255) aGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgt < 1:3909915‑M1/49‑23 (MQ=255) aGTTTCATAAGTCGTTCCCTCAGGAAGAATCGATGATTGGCATTTTTca > 2:3245826/1‑49 (MQ=255) gTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtca > 2:2300266‑M1/1‑26 (MQ=255) gTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtca < 1:2036701‑M1/50‑25 (MQ=255) gTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtca < 2:350455‑M1/50‑25 (MQ=255) gTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtca > 1:4298197‑M1/1‑26 (MQ=255) gTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtca < 1:1318196‑M1/50‑25 (MQ=255) gTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtca > 1:3216783‑M1/1‑26 (MQ=255) tttCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcac > 2:1056191‑M1/1‑25 (MQ=255) ttCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcacc > 2:1275957‑M1/1‑24 (MQ=255) tCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcacc < 2:5202507‑M1/49‑27 (MQ=255) aTAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggc < 2:4723928‑M1/50‑30 (MQ=255) aTAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccgg < 1:3930326‑M1/49‑29 (MQ=255) aTAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccgg < 1:4279500‑M1/49‑29 (MQ=255) aTAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccgg > 2:4834892‑M1/1‑21 (MQ=255) tAAGTCGTTCCCTCAGGAAGAATCGATGATTGGCATTTTTCACAGCATTc > 2:3867247/1‑50 (MQ=255) aaGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggca > 1:3496413‑M1/1‑19 (MQ=255) aGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcaca < 2:2853840‑M1/50‑33 (MQ=255) tCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaac > 1:3883036‑M1/1‑16 (MQ=255) tCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaac < 1:439764‑M1/50‑35 (MQ=255) cGTTCCCTCAGGAAGAATCGATGATTGGCATTTTTCACAGCATTCTAAc > 2:3981521/1‑49 (MQ=255) gTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaacc < 2:486858‑M1/49‑36 (MQ=255) gTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaacc < 1:5253962‑M1/49‑36 (MQ=255) gTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaacc > 1:2371610‑M1/1‑14 (MQ=255) gTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaacc > 1:1403796‑M1/1‑14 (MQ=255) gTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaacc > 1:1264818‑M1/1‑14 (MQ=255) ttCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccga < 2:3708304‑M1/50‑38 (MQ=255) cccTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccgat < 2:4814105‑M1/49‑39 (MQ=255) cccTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccgat < 2:3018061‑M1/49‑39 (MQ=255) cccTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccgat < 2:2032530‑M1/49‑39 (MQ=255) ccTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccgatcc < 1:1093430‑M1/50‑41 (MQ=255) ccTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccgatcc > 1:1562659‑M1/1‑10 (MQ=255) ccTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccgatcc > 2:1911713‑M1/1‑10 (MQ=255) cTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccgatccg > 2:4883801‑M1/1‑9 (MQ=255) cTCAGGAAGAATCGATGATTGGCATTTTTCACAGCATTCTAACAATCACg > 1:4683401/1‑50 (MQ=255) cTCAGGAAGAATCGATGATTGGCATTTTTCACAGCATTCTAACAATCACg > 1:785191/1‑50 (MQ=255) cAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccgatccgc > 2:2695386‑M1/1‑7 (MQ=255) aggaaggaaatgcgagtgatttcaccgtcaccggcacaaccgctccgcc > 1:3114505‑M1/1‑6 (MQ=255) aggaaggaaatgcgagtgatttcaccgtcaccggcacaaccgatccgc < 1:4878226‑M1/48‑43 (MQ=255) aGGAAGAATCGATGATTGGCATTTTTCACAGCATTCTAACAATCACGt < 1:4790345/48‑1 (MQ=255) ggaaggaaatgcgagtgatttcaccgtcaccggcacaaccgatccgcca > 1:847433‑M1/1‑5 (MQ=255) gaaggaaatgcgagtgatttcaccgtcaccggcacaaccgatccgccaaa < 1:2610235‑M1/50‑47 (MQ=255) aaggaaatgcgagtgatttcaccgtcaccggcacaaccgatccgccaaaa < 1:2426400‑M1/50‑48 (MQ=255) aaggaaatgcgagtgatttcaccgtcaccggcacaaccgatccgccaaa > 1:1743186‑M1/1‑3 (MQ=255) aggaaatgcgagtgatttcaccgtcaccggcacaaccgatccgccaaaaa < 2:4741390‑M1/50‑49 (MQ=255) aggaaatgcgagtgatttcaccgtcaccggcacaaccgatccgccaaa > 2:3645758‑M1/1‑2 (MQ=255) ggaaatgcgagtgatttcaccgtcaccggcacaaccgatccgccaaaaag < 1:4072914‑M1/50‑50 (MQ=255) ggaaatgcgagtgatttcaccgtcaccggcacaaccgatccgccaaaaag < 2:138238‑M1/50‑50 (MQ=255) ggaaatgcgagtgatttcaccgtcaccggcacaaccgatccgccaaa > 2:829105‑M1/1‑1 (MQ=255) gaaTCGATGATTGGCATTTTTCACAGCATTCTAACAATCACGTTTCATCg > 2:290503/1‑50 (MQ=255) | CATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGAATCGATGATTGGCATTTTTCACAGCATTCTAACAATCACGTTTCATCG > NC_000913/2558649‑2558747 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |