| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2558698 | 11 (0.100) | 100 (1.100) | 62/82 | 0.0 | 91.2% | intergenic (‑19/‑160) | eutB/intZ | ethanolamine ammonia‑lyase subunit alpha/CPZ‑55 prophage; putative phage integrase IntZ |
| ? | NC_000913 | 2565489 = | 10 (0.110) | coding (1396/1404 nt) | eutA | reactivating factor for ethanolamine ammonia‑lyase EutBC | |||||
Only 100 of 132 total aligned reads displayed.
AGCACCCAGCCACCCAGCGCCACCGCTGGCGAATACCGCATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAG > NC_000913/2565440‑2565537 | attgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagg < 2:1354208‑M2/1‑1 (MQ=255)attgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagg < 1:4698037‑M2/1‑1 (MQ=255) ttgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagga < 1:1354717‑M2/2‑1 (MQ=255) tgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagga > 1:5148314‑M2/48‑49 (MQ=255) gccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGaaa > 1:2599504‑M2/47‑50 (MQ=255) acccagccacccagcGCCACCGCTGGCGAATACCGCATTCAGGAAGGaaa < 2:3932973/50‑1 (MQ=255) ccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGaaa < 2:3814593‑M2/4‑1 (MQ=255) ccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAAt < 1:1058747‑M2/5‑1 (MQ=255) ccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAAt > 2:3345953‑M2/46‑50 (MQ=255) cgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATg > 1:981978‑M2/45‑50 (MQ=255) cgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATg < 1:550174‑M2/6‑1 (MQ=255) cgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATg > 2:4083610‑M2/45‑50 (MQ=255) gaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGc > 1:3558403‑M2/44‑50 (MQ=255) gaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGc > 1:3002110‑M2/44‑50 (MQ=255) gaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGc < 2:3569587‑M2/7‑1 (MQ=255) agccacccagcGCCACCGCTGGCGAATACCGCATTCAGGAAGGAAATGc > 2:2683274/1‑49 (MQ=255) agccacccagcGCCACCGCTGGCGAATACCGCATTCAGGAAGGAAATGCg < 1:1609459/50‑1 (MQ=255) aacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGc > 2:3908103‑M2/43‑49 (MQ=255) aacaatgtggtctttagtttcataagtcgttacctcaggaagGAAATGc > 1:3714311‑M2/43‑49 (MQ=255) acaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGa < 2:676937‑M2/9‑1 (MQ=255) acaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGa < 2:2820768‑M2/9‑1 (MQ=255) aatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGt < 1:3466752‑M2/11‑1 (MQ=255) aatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGt > 1:4168872‑M2/40‑50 (MQ=255) atgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTg < 2:2109002‑M2/12‑1 (MQ=255) tgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGa > 1:547971‑M2/38‑50 (MQ=255) tggtctttagtttcataagtcgttccctcaggcagGAAATGCGAGTGAtt > 1:4321782‑M2/36‑50 (MQ=255) tggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGAtt < 2:5030773‑M2/15‑1 (MQ=255) tggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGAtt > 2:3116475‑M2/36‑50 (MQ=255) ggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGAttt > 2:847634‑M2/35‑50 (MQ=255) gtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGAttt < 2:2211904‑M2/16‑1 (MQ=255) gtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGAttt < 1:707961‑M2/16‑1 (MQ=255) gtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGAttt > 2:1102982‑M2/34‑49 (MQ=255) gtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGAttt < 2:3744697‑M2/16‑1 (MQ=255) gtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtc < 2:3525510‑M2/17‑1 (MQ=255) tctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtca > 2:1939948‑M2/33‑50 (MQ=255) tagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccg < 1:69457‑M2/21‑1 (MQ=255) tagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcacc < 2:1548586‑M2/20‑1 (MQ=255) tagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcac < 1:4535975‑M2/19‑1 (MQ=255) agtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgt < 1:3909915‑M2/22‑1 (MQ=255) gtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtca > 2:2300266‑M2/27‑50 (MQ=255) gtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtca < 2:350455‑M2/24‑1 (MQ=255) gtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtca < 2:547204‑M2/24‑1 (MQ=255) gtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtca < 1:2036701‑M2/24‑1 (MQ=255) gtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtca > 1:3216783‑M2/27‑50 (MQ=255) gtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtca > 1:4298197‑M2/27‑50 (MQ=255) tttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtcac < 2:4802219‑M2/25‑1 (MQ=255) tttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtcac > 2:1056191‑M2/26‑50 (MQ=255) ttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtcacc > 2:1275957‑M2/25‑50 (MQ=255) tcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtcgcc < 1:1748756‑M2/26‑1 (MQ=255) tcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtcaccg > 1:5244134‑M2/24‑50 (MQ=255) tcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtcacc < 2:5202507‑M2/26‑1 (MQ=255) ataagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCgg > 2:4834892‑M2/22‑49 (MQ=255) ataagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCgg < 1:3930326‑M2/28‑1 (MQ=255) ataagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCgg > 1:4666840‑M2/22‑49 (MQ=255) ataagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGc < 2:4723928‑M2/29‑1 (MQ=255) cGAATACCGCATTCAGGAAGGAAATGCGTGTGATTTAACCGTCACCGGca > 2:4206759/1‑50 (MQ=255) gAATACCGCATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGcac < 2:4831231/50‑1 (MQ=255) aagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGca > 1:3496413‑M2/20‑49 (MQ=255) agtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGcaca < 2:2853840‑M2/32‑1 (MQ=255) agtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGcac < 1:1312291‑M2/31‑1 (MQ=255) agtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGcac > 2:2243246‑M2/19‑49 (MQ=255) tcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAAc < 1:439764‑M2/34‑1 (MQ=255) tcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAAc > 1:3883036‑M2/17‑50 (MQ=255) aCCGCATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAAcc > 2:2478689/1‑50 (MQ=255) gttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAAcc > 1:2371610‑M2/15‑49 (MQ=255) gttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAAcc > 1:1403796‑M2/15‑49 (MQ=255) gttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAAcc > 1:1264818‑M2/15‑49 (MQ=255) gttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAAcc > 2:833685‑M2/15‑49 (MQ=255) ttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGa < 2:3708304‑M2/37‑1 (MQ=255) ccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGAt < 2:4814105‑M2/38‑1 (MQ=255) ccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGAt < 2:3018061‑M2/38‑1 (MQ=255) cATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATc > 1:781469/1‑50 (MQ=255) cctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATcc > 1:2361407‑M2/11‑50 (MQ=255) cctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATcc > 1:1562659‑M2/11‑50 (MQ=255) cctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATcc > 2:3157633‑M2/11‑50 (MQ=255) cctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATcc < 2:484706‑M2/40‑1 (MQ=255) cctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATcc > 2:1911713‑M2/11‑50 (MQ=255) cctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATcc < 1:1093430‑M2/40‑1 (MQ=255) aTTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATcc > 2:2132727/1‑50 (MQ=255) ctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCg < 1:1449371‑M2/41‑1 (MQ=255) ctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCg > 2:4883801‑M2/10‑50 (MQ=255) caggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGc > 1:569891‑M2/8‑49 (MQ=255) caggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGc > 2:2695386‑M2/8‑49 (MQ=255) caggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGc > 2:2912683‑M2/8‑49 (MQ=255) aggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGCTCCGcc > 1:3114505‑M2/7‑49 (MQ=255) aggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGc < 1:4878226‑M2/42‑1 (MQ=255) ggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaa < 1:2581503‑M2/45‑1 (MQ=255) gaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaa < 1:2610235‑M2/46‑1 (MQ=255) gaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaa > 2:50091‑M2/5‑49 (MQ=255) gaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaa > 1:4229441‑M2/5‑49 (MQ=255) aagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaaa < 1:2426400‑M2/47‑1 (MQ=255) aagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaaa < 2:2099722‑M2/47‑1 (MQ=255) aagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaa > 1:1743186‑M2/4‑49 (MQ=255) aagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaa > 2:1357741‑M2/4‑49 (MQ=255) agGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaaaa < 2:4741390‑M2/48‑1 (MQ=255) agGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaa > 2:3645758‑M2/3‑48 (MQ=255) gGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaa > 2:829105‑M2/2‑47 (MQ=255) gGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAg < 1:4072914‑M2/49‑1 (MQ=255) gGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAg < 2:138238‑M2/49‑1 (MQ=255) gaaATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaaaa > 1:1504518/1‑48 (MQ=255) | AGCACCCAGCCACCCAGCGCCACCGCTGGCGAATACCGCATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAG > NC_000913/2565440‑2565537 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |