| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3453927 | 19 (0.170) | 76 (0.740) | 46/92 | 0.5 | 86.5% | coding (1/420 nt) | gspB | putative general secretion pathway protein B |
| ? | NC_000913 | 3469854 = | 6 (0.060) | intergenic (‑1/+291) | chiA/tufA | endochitinase/translation elongation factor Tu 1 | |||||
GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCG > NC_000913/3453878‑3453976 | gggTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT < 2:2260327‑M1/50‑1 (MQ=255) ggTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATt < 1:105828‑M1/50‑2 (MQ=255) ggTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATt < 2:2630528‑M1/50‑2 (MQ=255) ggTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATg > 2:1408383/1‑50 (MQ=255) gTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATta < 1:666194‑M1/50‑3 (MQ=255) gTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATta > 1:3391744‑M1/1‑48 (MQ=255) tGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtat < 2:1912412‑M1/50‑4 (MQ=255) tGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATta > 2:2820142‑M1/1‑47 (MQ=255) gACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtat > 2:2547185‑M1/1‑46 (MQ=255) aCCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataa < 1:4361653‑M1/50‑6 (MQ=255) aCCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataa < 1:4685729‑M1/50‑6 (MQ=255) aCCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtata < 2:2302764‑M1/49‑5 (MQ=255) aCCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtata < 1:4875518‑M1/49‑5 (MQ=255) aCCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtata < 1:944946‑M1/49‑5 (MQ=255) aCCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTAAAACATtata < 1:4204668‑M1/49‑5 (MQ=255) ccTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataat < 2:1265941‑M1/50‑7 (MQ=255) cTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtatattc > 1:4719847‑M1/1‑43 (MQ=255) tttctttcTGCTCACGCGCGGCGATATAGAATTCAAACATtataatccct > 1:4011803‑M1/1‑40 (MQ=255) tttctttcTGCTCACGCGCGGCGATATAGAATTCAAACATtataatccct > 1:2849297‑M1/1‑40 (MQ=255) tttctttcTGCTCACGCGCGGCGATATAGAATTCAAACATtataatccct < 2:528530‑M1/50‑11 (MQ=255) tttctttcTGCTCACGCGCGGCGATATAGAATTCAAACATtataatccc < 2:1918404‑M1/49‑10 (MQ=255) tttctttcTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTcc < 2:788955/49‑1 (MQ=255) tttctttcTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTc < 1:1040314/48‑1 (MQ=255) ttctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatccctt > 1:892637‑M1/1‑39 (MQ=255) tctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttg > 2:1232810‑M1/1‑38 (MQ=255) tctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttg > 2:3181907‑M1/1‑38 (MQ=255) tctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatccctt < 1:2422440‑M1/49‑12 (MQ=255) tctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatccctt < 2:1212645‑M1/49‑12 (MQ=255) tctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatccctt < 2:4901613‑M1/49‑12 (MQ=255) tttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgt > 2:1160826‑M1/1‑36 (MQ=255) ttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtga > 1:2448521‑M1/1‑35 (MQ=255) ttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtga > 2:101242‑M1/1‑35 (MQ=255) tctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtg < 1:738408‑M1/48‑15 (MQ=255) tctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtg < 2:3295227‑M1/48‑15 (MQ=255) tctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgt < 1:3300497‑M1/47‑14 (MQ=255) tctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgt < 1:3564608‑M1/47‑14 (MQ=255) tctGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCa < 2:711738/49‑1 (MQ=255) tctGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCa < 1:1183221/49‑1 (MQ=255) ctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgac < 1:3719104‑M1/49‑17 (MQ=255) tGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacg > 1:3791346‑M1/1‑32 (MQ=255) gCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgt > 1:5259300‑M1/1‑31 (MQ=255) cTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgt < 2:1292284‑M1/48‑19 (MQ=255) cTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACtgtt < 1:9152/50‑1 (MQ=255) cTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACtgtt > 1:5155413/1‑50 (MQ=255) cTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACtgt < 2:1735804/49‑1 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaa < 2:4513118‑M1/49‑23 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaa < 2:1993009‑M1/49‑23 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaa < 1:4625305‑M1/49‑23 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataaacccttgtgacgtaaaa < 2:3240135‑M1/49‑23 (MQ=255) cgcgcgGCGATATAGAATTCAAACATtataatctcttgtgacgtaaaaac < 2:270749‑M1/50‑25 (MQ=255) cgcgcgGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaac < 2:764842‑M1/50‑25 (MQ=255) cgcgcgGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaac < 1:4605947‑M1/50‑25 (MQ=255) gcgcgGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaact < 1:4234898‑M1/50‑26 (MQ=255) gcggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactg > 2:825135‑M1/1‑23 (MQ=255) gcggcgATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCg < 2:81782/50‑1 (MQ=255) cggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgc > 2:5071413‑M1/1‑22 (MQ=255) cggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgc > 1:2448928‑M1/1‑22 (MQ=255) ggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgca > 1:1526594‑M1/1‑21 (MQ=255) gcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaa < 2:2284690‑M1/50‑31 (MQ=255) cgATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGa < 2:3621689/50‑1 (MQ=255) gATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaac < 1:1473466‑M1/50‑33 (MQ=255) gATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaac < 2:4157676‑M1/50‑33 (MQ=255) gATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaac < 1:3161148‑M1/50‑33 (MQ=255) atatAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaaca < 1:1160993‑M1/50‑34 (MQ=255) atatAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGaaa < 1:1502759/50‑1 (MQ=255) tataGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaa < 1:3983249‑M1/50‑35 (MQ=255) ataGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaa > 2:3053963‑M1/1‑15 (MQ=255) ataGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaa > 2:2435986‑M1/1‑15 (MQ=255) ataGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaa > 2:2964237‑M1/1‑15 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaa < 2:3949857‑M1/49‑36 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaa < 2:2526057‑M1/49‑36 (MQ=255) taGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAatat > 1:3121891/1‑50 (MQ=255) taGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAata < 2:2767991/49‑1 (MQ=255) gAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATAtt < 1:1902440/49‑1 (MQ=255) aaTTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtc > 2:665349‑M1/1‑11 (MQ=255) aaTTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTg > 2:1429509/1‑50 (MQ=255) aaTTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTg < 1:3768464/50‑1 (MQ=255) aTTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcc < 1:2060791‑M1/50‑41 (MQ=255) aTTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcc > 1:3295637‑M1/1‑10 (MQ=255) ttCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcct < 1:2222676‑M1/50‑42 (MQ=255) ttCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcct < 1:1816043‑M1/50‑42 (MQ=255) ttCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcc > 1:1405571‑M1/1‑9 (MQ=255) tCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtccta > 2:4889553‑M1/1‑8 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac > 1:4375126‑M1/1‑7 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtccta < 1:5263563‑M1/49‑43 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtccta < 1:1458197‑M1/49‑43 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac < 1:3319889‑M1/49‑44 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac < 1:2174874‑M1/49‑44 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac < 1:2813109‑M1/49‑44 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac < 2:1456757‑M1/49‑44 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac < 2:2117509‑M1/49‑44 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac < 1:348486‑M1/49‑44 (MQ=255) aaaCATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTc < 1:362327/49‑1 (MQ=255) aaaCATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTc < 1:2822142/49‑1 (MQ=255) aCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacg > 2:5111636‑M1/1‑4 (MQ=255) cATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcag < 2:1708199‑M1/50‑48 (MQ=255) aTGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATccc < 1:4959679/50‑1 (MQ=255) ttataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcagga < 1:480116‑M1/50‑50 (MQ=255) ttataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcagg > 1:1044258‑M1/1‑1 (MQ=255) | GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCG > NC_000913/3453878‑3453976 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |