| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3453927 | 19 (0.170) | 76 (0.740) | 46/92 | 0.5 | 86.5% | coding (1/420 nt) | gspB | putative general secretion pathway protein B |
| ? | NC_000913 | 3469854 = | 6 (0.060) | intergenic (‑1/+291) | chiA/tufA | endochitinase/translation elongation factor Tu 1 | |||||
ACACCAGCCCCATACCAATCATAGATTTAGTAAATATATTTAATTTCATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGAA > NC_000913/3469805‑3469903 | ggtgacctgtttctttctgctcacgcgcggcgatatagaattcaaacatt < 1:105828‑M2/1‑1 (MQ=255)ggtgacctgtttctttctgctcacgcgcggcgatatagaattcaaacatt < 2:2630528‑M2/1‑1 (MQ=255) gtgacctgtttctttctgctcacgcgcggcgatatagaattcaaacatta < 1:666194‑M2/2‑1 (MQ=255) gtgacctgtttctttctgctcacgcgcggcgatatagaattcaaacatta > 1:3391744‑M2/49‑50 (MQ=255) tgacctgtttctttctgctcacgcgcggcgatatagaattcaaacattat < 2:1912412‑M2/3‑1 (MQ=255) tgacctgtttctttctgctcacgcgcggcgatatagaattcaaacatta > 2:2820142‑M2/48‑49 (MQ=255) gacctgtttctttctgctcacgcgcggcgatatagaattcaaacattat > 2:2547185‑M2/47‑49 (MQ=255) acctgtttctttctgctcacgcgcggcgatatagaattcaaacattata < 2:2302764‑M2/4‑1 (MQ=255) acctgtttctttctgctcacgcgcggcgatatagaattcaaacattata < 1:944946‑M2/4‑1 (MQ=255) acctgtttctttctgctcacgcgcggcgatatagaattcaaacattata < 1:4875518‑M2/4‑1 (MQ=255) acctgtttctttctgctcacgcgcggcgatatagaattcaaacatTATaa < 1:4685729‑M2/5‑1 (MQ=255) acctgtttctttctgctcacgcgcggcgatatagaattcaaacatTATaa < 1:4361653‑M2/5‑1 (MQ=255) acctgtttctttctgctcacgcgcggcgatatagaattaaaacattata < 1:4204668‑M2/4‑1 (MQ=255) cctgtttctttctgctcacgcgcggcgatatagaattcaaacatTATAAt < 2:1265941‑M2/6‑1 (MQ=255) ctgtttctttctgctcacgcgcggcgatatagaattcaaacatTATATTc > 1:4719847‑M2/44‑50 (MQ=255) tttctttctgctcacgcgcggcgatatagaattcaaacatTATAATccc < 2:1918404‑M2/9‑1 (MQ=255) tttctttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCt > 1:4011803‑M2/41‑50 (MQ=255) tttctttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCt > 1:2849297‑M2/41‑50 (MQ=255) tttctttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCt < 2:528530‑M2/10‑1 (MQ=255) ttctttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCtt > 1:892637‑M2/40‑50 (MQ=255) tctttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCtt < 1:2422440‑M2/11‑1 (MQ=255) tctttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCtt < 2:4901613‑M2/11‑1 (MQ=255) tctttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCtt < 2:1212645‑M2/11‑1 (MQ=255) tctttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTtg > 2:3181907‑M2/39‑50 (MQ=255) tctttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTtg > 2:1232810‑M2/39‑50 (MQ=255) tttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTtgt > 2:1160826‑M2/37‑49 (MQ=255) ttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGa > 2:101242‑M2/36‑50 (MQ=255) ttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGa > 1:2448521‑M2/36‑50 (MQ=255) tctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTtgtg < 1:738408‑M2/14‑1 (MQ=255) tctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTtgtg < 2:3295227‑M2/14‑1 (MQ=255) tctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTtgt < 1:3564608‑M2/13‑1 (MQ=255) tctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTtgt < 1:3300497‑M2/13‑1 (MQ=255) ctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGAc < 1:3719104‑M2/16‑1 (MQ=255) aaTCATAGATTTAGTAAATATATTTAATTTCATTATAATCCCTTGTGACg > 1:1111794/1‑50 (MQ=255) tgctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACg > 1:3791346‑M2/33‑49 (MQ=255) gctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGt > 1:5259300‑M2/32‑49 (MQ=255) ctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGt < 2:1292284‑M2/18‑1 (MQ=255) acgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTaaaa < 1:4625305‑M2/22‑1 (MQ=255) acgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTaaaa < 2:4513118‑M2/22‑1 (MQ=255) acgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTaaaa < 2:1993009‑M2/22‑1 (MQ=255) acgcgcggcgatatagaattcaaacatTATAAACCCTTGTGACGTaaaa < 2:3240135‑M2/22‑1 (MQ=255) cgcgcggcgatatagaattcaaacatTATAATCTCTTGTGACGTAAAAAc < 2:270749‑M2/24‑1 (MQ=255) cgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAAc < 1:4605947‑M2/24‑1 (MQ=255) cgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAAc < 2:764842‑M2/24‑1 (MQ=255) gcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACt < 1:4234898‑M2/25‑1 (MQ=255) gcggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTg > 2:825135‑M2/24‑49 (MQ=255) cggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGc > 2:5071413‑M2/23‑49 (MQ=255) cggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGc > 1:2448928‑M2/23‑49 (MQ=255) ggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGca > 1:1526594‑M2/22‑49 (MQ=255) aGTAAATATATTTAATTTCATTATAATCCCTTGTGACGTAAAAACTGca > 1:4431685/1‑49 (MQ=255) gcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaa < 2:2284690‑M2/30‑1 (MQ=255) tAAATATATTTAATTTCATTATAATCCCTTGTGACGTAAAAACTGcaaaa < 2:2538978/50‑1 (MQ=255) gatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaac < 1:1473466‑M2/32‑1 (MQ=255) gatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaac < 2:4157676‑M2/32‑1 (MQ=255) gatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaac < 1:3161148‑M2/32‑1 (MQ=255) atatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaaca < 1:1160993‑M2/33‑1 (MQ=255) tatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaacaa < 1:3983249‑M2/34‑1 (MQ=255) atagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaacaa > 2:2964237‑M2/16‑49 (MQ=255) atagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaacaa > 2:3053963‑M2/16‑49 (MQ=255) atagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaacaa > 2:2435986‑M2/16‑49 (MQ=255) tagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaacaaa < 2:3949857‑M2/35‑1 (MQ=255) tagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaacaaa < 2:2526057‑M2/35‑1 (MQ=255) tttAATTTCATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGt < 1:90906/49‑1 (MQ=255) aattcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTc > 2:665349‑M2/12‑50 (MQ=255) ttAATTTCATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTcc > 1:1941815/1‑50 (MQ=255) attcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTcc > 1:3295637‑M2/11‑50 (MQ=255) attcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTcc < 1:2060791‑M2/40‑1 (MQ=255) ttcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTcc > 1:1405571‑M2/10‑49 (MQ=255) ttcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCt < 1:2222676‑M2/41‑1 (MQ=255) ttcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCt < 1:1816043‑M2/41‑1 (MQ=255) tcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTa > 2:4889553‑M2/9‑50 (MQ=255) caaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTa < 1:5263563‑M2/42‑1 (MQ=255) caaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTa < 1:1458197‑M2/42‑1 (MQ=255) caaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAc > 1:4375126‑M2/8‑50 (MQ=255) aTTTCATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAc < 1:4172751/50‑1 (MQ=255) aaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAc < 2:2117509‑M2/43‑1 (MQ=255) aaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAc < 1:348486‑M2/43‑1 (MQ=255) aaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAc < 2:1456757‑M2/43‑1 (MQ=255) aaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAc < 1:2174874‑M2/43‑1 (MQ=255) aaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAc < 1:3319889‑M2/43‑1 (MQ=255) aaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAc < 1:2813109‑M2/43‑1 (MQ=255) acatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACg > 2:5111636‑M2/5‑48 (MQ=255) catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAg < 2:1708199‑M2/47‑1 (MQ=255) tTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAgg > 1:1044258‑M2/2‑49 (MQ=255) tTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGa < 1:480116‑M2/49‑1 (MQ=255) tataATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGaa > 1:4062597/1‑50 (MQ=255) | ACACCAGCCCCATACCAATCATAGATTTAGTAAATATATTTAATTTCATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGAA > NC_000913/3469805‑3469903 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |