| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3618991 | 5 (0.050) | 115 (1.070) | 65/96 | 0.0 | 95.9% | intergenic (+2/‑201) | nikR/rhsB | DNA‑binding transcriptional repressor NikR/rhs element protein RhsB |
| ? | NC_000913 | 3625680 = | NA (NA) | coding (1124/1125 nt) | yhhJ | ABC transporter family protein YhhJ | |||||
Only 100 of 123 total aligned reads displayed.
CGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACA > NC_000913/3618942‑3619039 | cgcgGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT > 2:4209074‑M1/1‑50 (MQ=255)cgcgGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT < 2:1539218‑M1/50‑1 (MQ=255) gcggcgTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTt < 1:2515174‑M1/50‑2 (MQ=255) gcggcgTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTt < 2:471579‑M1/50‑2 (MQ=255) cggcgTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTta < 2:2295069‑M1/50‑3 (MQ=255) cggcgTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTta > 2:2889172‑M1/1‑48 (MQ=255) cggcgTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTta < 1:878143‑M1/50‑3 (MQ=255) cggcgTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTta < 1:4254600‑M1/50‑3 (MQ=255) gTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgc > 1:5115810‑M1/1‑44 (MQ=255) tGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgcca < 1:3863811‑M1/50‑8 (MQ=255) cGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccatt > 1:399335‑M1/1‑41 (MQ=255) cGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccatt < 1:2369470‑M1/50‑10 (MQ=255) cGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccatt > 1:3824328‑M1/1‑41 (MQ=255) cGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccat < 1:4341022‑M1/49‑9 (MQ=255) ggCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattg > 1:1162533‑M1/1‑40 (MQ=255) ggCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattg > 1:2664784‑M1/1‑40 (MQ=255) gCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgt > 2:5360995‑M1/1‑39 (MQ=255) gCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgt > 1:1206507‑M1/1‑39 (MQ=255) cACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtc < 2:4932179‑M1/50‑13 (MQ=255) cACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtc < 2:4226199‑M1/50‑13 (MQ=255) cACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtc < 2:3593813‑M1/50‑13 (MQ=255) aCGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcc > 2:1803931‑M1/1‑37 (MQ=255) aCGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcc > 1:819443‑M1/1‑37 (MQ=255) aCGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcc > 2:1379959‑M1/1‑37 (MQ=255) aCGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcc > 1:2370914‑M1/1‑37 (MQ=255) aCGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcc > 1:2834256‑M1/1‑37 (MQ=255) cGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtccc < 1:3288678‑M1/50‑15 (MQ=255) cGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtccc < 1:1482829‑M1/50‑15 (MQ=255) gggCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccgttgtccca < 2:4768390‑M1/50‑16 (MQ=255) gggCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtccc > 1:3940901‑M1/1‑35 (MQ=255) ggCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaa < 1:3004194‑M1/50‑17 (MQ=255) ggCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaa > 2:2380481‑M1/1‑34 (MQ=255) gCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaat < 2:1907006‑M1/50‑18 (MQ=255) gCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaat < 1:3157114‑M1/50‑18 (MQ=255) gCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaat < 2:2991322‑M1/50‑18 (MQ=255) gCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaat < 1:805903‑M1/50‑18 (MQ=255) cATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatc > 2:2452315‑M1/1‑32 (MQ=255) cATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatc > 2:3157551‑M1/1‑32 (MQ=255) cATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTg < 1:662820/50‑1 (MQ=255) cATTTGCAGTGCTTGCCGAAGGAAGACTGAGTtacgccattgtcccaatc > 1:4398922‑M1/1‑32 (MQ=255) tttGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgt < 1:4688228‑M1/50‑21 (MQ=255) tttGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGt < 1:2869452/50‑1 (MQ=255) ttGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtc > 1:4861395‑M1/1‑29 (MQ=255) tGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtct > 2:4551565‑M1/1‑28 (MQ=255) tGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtc < 2:1940081‑M1/49‑22 (MQ=255) gCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtctt > 2:4897084‑M1/1‑27 (MQ=255) gCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtct < 1:1697638‑M1/49‑23 (MQ=255) cAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttc > 2:1904470‑M1/1‑26 (MQ=255) cAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttc < 2:1571512‑M1/50‑25 (MQ=255) cAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtctt < 1:3923377‑M1/49‑24 (MQ=255) cAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtctt < 2:3255054‑M1/49‑24 (MQ=255) cAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtctt < 1:4443993‑M1/49‑24 (MQ=255) cAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtctt < 2:5250265‑M1/49‑24 (MQ=255) aGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcc < 2:2075918‑M1/50‑26 (MQ=255) gTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcct > 1:1565486‑M1/1‑24 (MQ=255) gTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcct < 2:4939690‑M1/50‑27 (MQ=255) tGCTTGCCGGAGGAAGATTGAGTtacgccagtgtcccagtcgtcttcct < 2:1403930‑M1/49‑27 (MQ=255) tGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctg < 1:320641‑M1/50‑28 (MQ=255) cTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaa > 1:1192338‑M1/1‑21 (MQ=255) cTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaa < 2:4826978‑M1/50‑30 (MQ=255) cTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaa < 1:2025926‑M1/50‑30 (MQ=255) cTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaa < 1:5085754‑M1/50‑30 (MQ=255) cTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctga < 1:771110‑M1/49‑29 (MQ=255) tGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaatc > 2:1465368‑M1/1‑19 (MQ=255) gCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaatcg > 1:1040941‑M1/1‑18 (MQ=255) gCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaat < 2:2987260‑M1/48‑31 (MQ=255) gCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaat < 1:1989700‑M1/48‑31 (MQ=255) gCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATcaa < 2:1067365/48‑1 (MQ=255) ccGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaatcg < 2:4143992‑M1/49‑33 (MQ=255) ccGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaatcg > 2:3016008‑M1/1‑17 (MQ=255) cGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaatcgca < 2:3703679‑M1/50‑35 (MQ=255) cGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaatcg > 2:1224369‑M1/1‑16 (MQ=255) gaaggaagATTGAGTtactccattgtcccaatcgtcttcctgaatcgcag < 2:4122730‑M1/50‑36 (MQ=255) aaggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcag > 2:1479844‑M1/1‑14 (MQ=255) aaggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcag > 1:4762046‑M1/1‑14 (MQ=255) aggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagca < 1:5124876‑M1/50‑38 (MQ=255) aggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcag > 2:3179849‑M1/1‑13 (MQ=255) ggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcag > 2:3086819‑M1/1‑12 (MQ=255) ggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcag > 1:951066‑M1/1‑12 (MQ=255) gaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagc > 2:2825319‑M1/1‑11 (MQ=255) gaagATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGc > 1:2693524/1‑49 (MQ=255) aagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcg < 1:1520864‑M1/50‑41 (MQ=255) aagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcg > 2:1762880‑M1/1‑10 (MQ=255) aagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcg < 1:4200489‑M1/50‑41 (MQ=255) aagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcg > 2:1149319‑M1/1‑10 (MQ=255) agATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcg > 1:4205032‑M1/1‑9 (MQ=255) gATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgc > 1:1292096‑M1/1‑8 (MQ=255) gATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACt < 2:658862/50‑1 (MQ=255) aTTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaa > 1:186346‑M1/1‑7 (MQ=255) ttGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaat < 1:2543740‑M1/50‑45 (MQ=255) ttGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaat < 1:1049194‑M1/50‑45 (MQ=255) tGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatg > 2:52749‑M1/1‑5 (MQ=255) tGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatg > 2:574627‑M1/1‑5 (MQ=255) gAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatgg > 2:240324‑M1/1‑4 (MQ=255) gAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatgg > 2:1680789‑M1/1‑4 (MQ=255) aGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatggt > 2:3455140‑M1/1‑3 (MQ=255) aGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatggt < 1:2876091‑M1/50‑48 (MQ=255) gTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatggtg < 2:3611129‑M1/50‑49 (MQ=255) gTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatggtg < 2:631904‑M1/50‑49 (MQ=255) ttacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatggtg > 1:1739446‑M1/1‑1 (MQ=255) | CGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACA > NC_000913/3618942‑3619039 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |