| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3618991 | 5 (0.050) | 115 (1.070) | 65/96 | 0.0 | 95.9% | intergenic (+2/‑201) | nikR/rhsB | DNA‑binding transcriptional repressor NikR/rhs element protein RhsB |
| ? | NC_000913 | 3625680 = | NA (NA) | coding (1124/1125 nt) | yhhJ | ABC transporter family protein YhhJ | |||||
Only 100 of 138 total aligned reads displayed.
TTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGA > NC_000913/3625631‑3625728 | gcggcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtt < 1:2515174‑M2/1‑1 (MQ=255) cggcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTa < 1:878143‑M2/2‑1 (MQ=255) cggcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTa > 2:2889172‑M2/49‑50 (MQ=255) cggcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTa < 1:4254600‑M2/2‑1 (MQ=255) cggcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTa > 2:676343‑M2/49‑50 (MQ=255) gcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACg < 2:4094748‑M2/4‑1 (MQ=255) gtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGc > 2:1257498‑M2/45‑49 (MQ=255) gtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGc > 1:5115810‑M2/45‑49 (MQ=255) tgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCa < 1:3863811‑M2/7‑1 (MQ=255) cggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCAtt > 1:3824328‑M2/42‑50 (MQ=255) cggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCAtt > 1:399335‑M2/42‑50 (MQ=255) cggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCAtt < 1:2369470‑M2/9‑1 (MQ=255) cggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCAtt > 1:2138697‑M2/42‑50 (MQ=255) cggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCAt < 2:424330‑M2/8‑1 (MQ=255) ggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTg > 1:1162533‑M2/41‑50 (MQ=255) gcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGt > 1:1206507‑M2/40‑50 (MQ=255) gcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGt > 2:5360995‑M2/40‑50 (MQ=255) gcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGt > 1:87381‑M2/40‑50 (MQ=255) gcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGt > 1:3496826‑M2/40‑50 (MQ=255) cacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTc < 2:4932179‑M2/12‑1 (MQ=255) gTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTcc > 2:2946156/1‑50 (MQ=255) acgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTcc > 2:1803931‑M2/38‑50 (MQ=255) acgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTcc > 2:3395607‑M2/38‑50 (MQ=255) acgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTcc > 2:1379959‑M2/38‑50 (MQ=255) acgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTcc > 1:2834256‑M2/38‑50 (MQ=255) tAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTcc > 2:1108563/1‑49 (MQ=255) cgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTccc < 1:3288678‑M2/14‑1 (MQ=255) cgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTccc < 1:1482829‑M2/14‑1 (MQ=255) gggcatttgcagtgcttgccgaaggaagattgagtTACGCCGTTGTCCCa < 2:4768390‑M2/15‑1 (MQ=255) gggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTccc > 1:4326401‑M2/36‑49 (MQ=255) ggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCaa < 1:3004194‑M2/16‑1 (MQ=255) ggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCaa > 2:2380481‑M2/35‑50 (MQ=255) gTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCa < 1:4527795/49‑1 (MQ=255) gcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAAt < 2:2991322‑M2/17‑1 (MQ=255) gcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAAt < 2:1907006‑M2/17‑1 (MQ=255) gcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAAt < 1:805903‑M2/17‑1 (MQ=255) gcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAAt < 1:3157114‑M2/17‑1 (MQ=255) catttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATc > 2:2452315‑M2/33‑50 (MQ=255) catttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATc > 2:3157551‑M2/33‑50 (MQ=255) catttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATc < 1:4817981‑M2/18‑1 (MQ=255) catttgcagtgcttgccgaaggaagactgagtTACGCCATTGTCCCAATc > 1:4398922‑M2/33‑50 (MQ=255) ttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTc > 1:4861395‑M2/30‑50 (MQ=255) tgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTc < 1:2625097‑M2/21‑1 (MQ=255) tgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCt > 2:4551565‑M2/29‑50 (MQ=255) taAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTc < 1:968899/48‑1 (MQ=255) taAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCt < 1:1207494/49‑1 (MQ=255) gcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCtt > 2:4897084‑M2/28‑50 (MQ=255) gcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCt < 1:1697638‑M2/22‑1 (MQ=255) cagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCtt < 2:5250265‑M2/23‑1 (MQ=255) cagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCtt < 1:4443993‑M2/23‑1 (MQ=255) cagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCtt < 1:3923377‑M2/23‑1 (MQ=255) cagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTc > 2:1904470‑M2/27‑50 (MQ=255) cagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTc < 2:1571512‑M2/24‑1 (MQ=255) agtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTcc < 2:2075918‑M2/25‑1 (MQ=255) aGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTc < 2:1378385/49‑1 (MQ=255) gtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCt < 2:4939690‑M2/26‑1 (MQ=255) gtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCt > 1:1565486‑M2/25‑50 (MQ=255) cttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGaa < 1:2025926‑M2/29‑1 (MQ=255) cttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGaa < 2:4826978‑M2/29‑1 (MQ=255) cttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGa < 1:771110‑M2/28‑1 (MQ=255) ttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAAt > 1:397697‑M2/21‑50 (MQ=255) tgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATc > 2:1465368‑M2/20‑50 (MQ=255) cGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGGCTTCCTGAAt < 2:3615997/49‑1 (MQ=255) gccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAAt < 1:1989700‑M2/30‑1 (MQ=255) gccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCg > 1:1040941‑M2/19‑50 (MQ=255) ccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCg < 2:4143992‑M2/32‑1 (MQ=255) cgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgca < 2:3703679‑M2/34‑1 (MQ=255) aTCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCg > 1:1221591/1‑48 (MQ=255) gaaggaagattgagtTACTCCATTGTCCCAATCGTCTTCCTGAATCgcag < 2:4122730‑M2/35‑1 (MQ=255) gaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag > 2:3013772‑M2/16‑50 (MQ=255) aaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag > 2:1479844‑M2/15‑49 (MQ=255) aaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag > 1:4762046‑M2/15‑49 (MQ=255) aggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcagca < 1:5124876‑M2/37‑1 (MQ=255) aggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag > 2:3179849‑M2/14‑48 (MQ=255) ggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGcagcag > 2:3086819‑M2/13‑50 (MQ=255) ggCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGcagcag > 1:65711/1‑50 (MQ=255) gaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCagcagc > 2:2825319‑M2/12‑50 (MQ=255) gCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCagcagc > 1:1742838/1‑50 (MQ=255) aagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcg < 1:4200489‑M2/40‑1 (MQ=255) aagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcg < 1:1520864‑M2/40‑1 (MQ=255) aagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcg > 2:1149319‑M2/11‑50 (MQ=255) aagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcg > 2:1762880‑M2/11‑50 (MQ=255) gattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcgc > 1:1292096‑M2/9‑49 (MQ=255) aTTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCa < 1:1866302/50‑1 (MQ=255) ttgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAt < 1:1049194‑M2/44‑1 (MQ=255) ttgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAt < 1:2543740‑M2/44‑1 (MQ=255) tgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 2:2238044‑M2/6‑50 (MQ=255) tgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 2:52749‑M2/6‑50 (MQ=255) tgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 2:574627‑M2/6‑50 (MQ=255) tATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATgg < 2:919704/50‑1 (MQ=255) gagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATgg > 2:240324‑M2/5‑50 (MQ=255) gagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATgg > 2:1680789‑M2/5‑50 (MQ=255) agtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGt > 2:3455140‑M2/4‑50 (MQ=255) agtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGt < 1:2876091‑M2/47‑1 (MQ=255) aTTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGt > 2:579260/1‑50 (MQ=255) tttACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGt > 1:156888/1‑49 (MQ=255) tttACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTg < 1:2676441/50‑1 (MQ=255) gtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTg < 2:3611129‑M2/48‑1 (MQ=255) tTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTg > 1:1739446‑M2/2‑49 (MQ=255) tACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGa > 2:4974314/1‑49 (MQ=255) | TTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGA > NC_000913/3625631‑3625728 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |