| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3888431 | 20 (0.180) | 84 (0.780) | 55/96 | 0.1 | 85.0% | intergenic (+239/‑4) | mnmE/tnaC | 5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide |
| ? | NC_000913 | 3906599 = | 10 (0.090) | intergenic (‑32/+254) | bglG/phoU | transcriptional antiterminator BglG/negative regulator of the pho regulon | |||||
Only 100 of 108 total aligned reads displayed.
AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATT > NC_000913/3888382‑3888479 | aaaaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC > 1:3149437‑M1/1‑50 (MQ=255)aaaaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC < 2:2281980‑M1/50‑1 (MQ=255)aaaaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC > 2:2274336‑M1/1‑50 (MQ=255) aaaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCc < 1:4324595‑M1/50‑2 (MQ=255) aaaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCc > 2:4668399‑M1/1‑49 (MQ=255) aaaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCc < 2:4562535‑M1/50‑2 (MQ=255) aaaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCc > 1:1064984‑M1/1‑49 (MQ=255) aaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcg < 1:2784793‑M1/50‑3 (MQ=255) aaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcga < 1:1380266‑M1/50‑4 (MQ=255) aaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcga < 2:2603161‑M1/50‑4 (MQ=255) aaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCAt > 1:3590435/1‑49 (MQ=255) aCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgac > 1:4920728‑M1/1‑46 (MQ=255) aCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgac < 2:3882428‑M1/50‑5 (MQ=255) aCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTa > 1:1084127/1‑50 (MQ=255) aCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTa > 2:4863408/1‑50 (MQ=255) ctctGAGTGTAATAATGTAGCCTCGTGTCTTTCGAGGATAAGTGCATTAt > 1:4930087/1‑50 (MQ=255) ctctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgact > 2:1345433‑M1/1‑45 (MQ=255) ctctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgact > 2:1065633‑M1/1‑45 (MQ=255) ctctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgact < 2:4482850‑M1/50‑6 (MQ=255) tctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgactt > 1:711174‑M1/1‑44 (MQ=255) tctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgactt > 2:2466653‑M1/1‑44 (MQ=255) ctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgactt > 1:2506560‑M1/1‑43 (MQ=255) ctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgactt > 1:3174970‑M1/1‑43 (MQ=255) tGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgactt < 1:3299575‑M1/48‑7 (MQ=255) aGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcac > 2:642877‑M1/1‑40 (MQ=255) aGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAata > 1:5038315/1‑50 (MQ=255) gtgtAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAatat < 1:72279/50‑1 (MQ=255) tgtAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccag < 2:976528‑M1/50‑13 (MQ=255) tgtAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccag > 1:3751811‑M1/1‑38 (MQ=255) tgtAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATc > 1:5121538/1‑50 (MQ=255) gtAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccag > 1:1792649‑M1/1‑37 (MQ=255) taataaTGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagta < 2:4933000‑M1/50‑15 (MQ=255) taataaTGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagta > 2:633831‑M1/1‑36 (MQ=255) taataaTGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagta < 1:1577564‑M1/50‑15 (MQ=255) taataaTGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagta > 1:151911‑M1/1‑36 (MQ=255) taataaTGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagt < 2:4966313‑M1/49‑14 (MQ=255) aataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTa > 1:4295835/1‑50 (MQ=255) aataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTa > 1:4926577/1‑50 (MQ=255) ataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtatt < 2:5267567‑M1/50‑17 (MQ=255) ataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtatt < 1:170138‑M1/50‑17 (MQ=255) ataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtatt > 1:636841‑M1/1‑34 (MQ=255) ataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtatt > 2:3699997‑M1/1‑34 (MQ=255) taatGTAGCCTCGTGTCTTGCGAGGATAAGTGTcgacttcaccagtattc > 2:256371‑M1/1‑33 (MQ=255) taatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattc > 1:5044146‑M1/1‑33 (MQ=255) taatGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACa > 2:5139030/1‑50 (MQ=255) atGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctc < 1:4445846‑M1/50‑20 (MQ=255) tGTAGTCTCGCGTCATGCGAGGATAAGTGCAGTATGAATATCTtatata > 2:2335345/1‑49 (MQ=255) tGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctct < 1:1179161‑M1/50‑21 (MQ=255) tGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACatat < 1:5185666/50‑1 (MQ=255) tAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctgg < 2:2189902‑M1/50‑23 (MQ=255) tAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctgg > 1:3966454‑M1/1‑28 (MQ=255) tAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctgg > 2:3204675‑M1/1‑28 (MQ=255) tAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACatata < 1:3378551/49‑1 (MQ=255) aGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggt > 2:4092042‑M1/1‑27 (MQ=255) aGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggt > 1:3757315‑M1/1‑27 (MQ=255) gCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggtt < 1:3172976‑M1/50‑25 (MQ=255) ccTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATAtgtg < 2:3633142/50‑1 (MQ=255) ccTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATAtgtg < 2:1133463/50‑1 (MQ=255) cTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttat < 2:899210‑M1/50‑27 (MQ=255) tCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatg > 1:659413‑M1/1‑23 (MQ=255) tCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatg > 2:2648319‑M1/1‑23 (MQ=255) tCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATAtgtgt > 1:4795914/1‑49 (MQ=255) cGTGTCTTGCGCGGATAAGGGCcgacttcaccagtattctctggttatgt > 2:4093986‑M1/1‑22 (MQ=255) gtgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgt < 1:3741855‑M1/49‑29 (MQ=255) gtgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgt > 2:5184943‑M1/1‑21 (MQ=255) gtgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgt > 1:1496917‑M1/1‑21 (MQ=255) gtgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgt < 1:1519660‑M1/49‑29 (MQ=255) gtgtCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGAc > 1:3582764/1‑50 (MQ=255) tgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtca < 2:741227‑M1/50‑31 (MQ=255) gtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcag > 1:2426882‑M1/1‑19 (MQ=255) tCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcagg < 1:4017668‑M1/50‑33 (MQ=255) tCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcagg < 1:1692812‑M1/50‑33 (MQ=255) tCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcag < 2:1804986‑M1/49‑32 (MQ=255) tCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcag < 1:4468110‑M1/49‑32 (MQ=255) cTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggt > 1:3785697‑M1/1‑17 (MQ=255) tGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCaa > 1:528760/1‑49 (MQ=255) gCGAGGATAAGTGCcgacttcgccagtattctctggttatttcaggt < 1:5185539‑M1/47‑34 (MQ=255) gCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggtttt > 1:2567800‑M1/1‑14 (MQ=255) gCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggtt < 1:3828852‑M1/48‑35 (MQ=255) gCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggtt < 1:3719095‑M1/48‑35 (MQ=255) gCGAGGATAAGTGCcgacttcaccagtattctctggttatgccaggtttt > 1:3031757‑M1/1‑14 (MQ=255) cGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttttg < 1:4539472‑M1/50‑38 (MQ=255) cGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggtttt < 2:4963682‑M1/49‑37 (MQ=255) cGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggtttt < 1:2111585‑M1/49‑37 (MQ=255) gAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgc < 2:5319534‑M1/50‑39 (MQ=255) gAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgc < 1:2002204‑M1/50‑39 (MQ=255) aGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcc > 1:1634964‑M1/1‑11 (MQ=255) aGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcc < 1:3465718‑M1/50‑40 (MQ=255) aGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATgg > 2:1006084/1‑50 (MQ=255) aTAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgc < 2:3717766‑M1/50‑43 (MQ=255) aTAAGTGCcgactgcaccagtattctctggttatgtcaggttttgcctgc < 2:241349‑M1/50‑43 (MQ=255) tAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcg < 1:1237108‑M1/50‑44 (MQ=255) aGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaa < 2:755254‑M1/50‑46 (MQ=255) aGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcga < 1:2490157‑M1/49‑45 (MQ=255) tGCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaatg < 2:2787466‑M1/50‑48 (MQ=255) tGCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaatg < 2:829026‑M1/50‑48 (MQ=255) tGCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaatg < 1:4923817‑M1/50‑48 (MQ=255) tGCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaatg > 2:98087‑M1/1‑3 (MQ=255) gCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaatg > 1:2625904‑M1/1‑2 (MQ=255) ccgacttcaccagtattctctggttatgtcaggttttgcctgcgaatgc < 2:1384327‑M1/49‑49 (MQ=255) | AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATT > NC_000913/3888382‑3888479 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |