| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3888431 | 20 (0.180) | 84 (0.780) | 55/96 | 0.1 | 85.0% | intergenic (+239/‑4) | mnmE/tnaC | 5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide |
| ? | NC_000913 | 3906599 = | 10 (0.090) | intergenic (‑32/+254) | bglG/phoU | transcriptional antiterminator BglG/negative regulator of the pho regulon | |||||
GGTGATTTGCATGTTCATAGCAAGGACCTTTTTTATAAACAAAAAAACCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCAG > NC_000913/3906550‑3906648 | aaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcc < 1:5045868‑M2/1‑1 (MQ=255)aaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcc > 1:1064984‑M2/50‑50 (MQ=255)aaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcc < 1:4324595‑M2/1‑1 (MQ=255)aaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcc > 1:3260588‑M2/50‑50 (MQ=255)aaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcc < 2:4562535‑M2/1‑1 (MQ=255)aaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcc > 2:4668399‑M2/50‑50 (MQ=255) gTGATTTGCATGTTCATAGCAAGGACCTTTTTTATAAACAAAAAAAccc < 2:1238879/49‑1 (MQ=255) aaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCg < 1:2784793‑M2/2‑1 (MQ=255) aactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGa < 1:1380266‑M2/3‑1 (MQ=255) aactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGa < 2:2603161‑M2/3‑1 (MQ=255) actctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGAc > 1:4920728‑M2/47‑50 (MQ=255) actctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGAc < 2:3882428‑M2/4‑1 (MQ=255) ctctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACt > 2:1345433‑M2/46‑50 (MQ=255) ctctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACt > 2:1065633‑M2/46‑50 (MQ=255) ctctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACt < 2:4482850‑M2/5‑1 (MQ=255) tctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACtt > 2:2466653‑M2/45‑50 (MQ=255) tctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACtt > 1:711174‑M2/45‑50 (MQ=255) ctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACtt > 1:3174970‑M2/44‑49 (MQ=255) ctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACtt > 1:2506560‑M2/44‑49 (MQ=255) tgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACtt < 1:3299575‑M2/6‑1 (MQ=255) tGCATGTTCATAGCAAGGACCTTTTTTATAAACAAAAAAACCCGACTTc < 1:1598321/49‑1 (MQ=255) tGCATGTTCATAGCAAGGACCTTTTTTATAAACAAAAAAACCCGACTTc < 1:3817294/49‑1 (MQ=255) agtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCAc > 2:642877‑M2/41‑49 (MQ=255) tgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAg < 2:976528‑M2/12‑1 (MQ=255) tgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAg > 1:3751811‑M2/39‑50 (MQ=255) tGTTCATAGCAAGGACCTTTTTTATAAACAAAAAAACCCGACTTCACCAg < 2:4599958/50‑1 (MQ=255) tGTTCATAGCAAGGACCTTTTTTATAAACAAAAAAACCCGACTTCACCAg > 2:3347014/1‑50 (MQ=255) gtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAg > 1:1792649‑M2/38‑49 (MQ=255) taataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGt < 2:4966313‑M2/13‑1 (MQ=255) taataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTa > 1:151911‑M2/37‑50 (MQ=255) taataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTa < 2:4933000‑M2/14‑1 (MQ=255) taataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTa > 2:633831‑M2/37‑50 (MQ=255) taataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTa < 1:1577564‑M2/14‑1 (MQ=255) ataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAtt > 1:636841‑M2/35‑50 (MQ=255) ataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAtt > 2:3699997‑M2/35‑50 (MQ=255) ataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAtt < 1:170138‑M2/16‑1 (MQ=255) ataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAtt < 2:5267567‑M2/16‑1 (MQ=255) ataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAt < 2:3448679‑M2/15‑1 (MQ=255) taatgtagcctcgtgtcttgcgaggataagtgtCGACTTCACCAGTATtc > 2:256371‑M2/34‑50 (MQ=255) taatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtc > 1:5044146‑M2/34‑50 (MQ=255) atgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtctc < 1:4208338‑M2/19‑1 (MQ=255) atgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtctc < 1:4445846‑M2/19‑1 (MQ=255) tgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTctct < 1:1179161‑M2/20‑1 (MQ=255) tagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTgg > 1:3966454‑M2/29‑50 (MQ=255) tagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTgg < 2:2189902‑M2/22‑1 (MQ=255) tagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTgg > 2:3204675‑M2/29‑50 (MQ=255) agcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGt > 2:982602‑M2/28‑50 (MQ=255) agcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGt > 2:4092042‑M2/28‑50 (MQ=255) agcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGt > 1:3757315‑M2/28‑50 (MQ=255) gcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGtt < 1:3172976‑M2/24‑1 (MQ=255) gcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGt < 2:5066081‑M2/23‑1 (MQ=255) ctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTAt < 2:899210‑M2/26‑1 (MQ=255) tcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATg > 2:2648319‑M2/24‑50 (MQ=255) tcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATg > 1:659413‑M2/24‑50 (MQ=255) cgtgtcttgcgcggataagggcCGACTTCACCAGTATTCTCTGGTTATGt > 2:4093986‑M2/23‑50 (MQ=255) cTTTTTTATAAACAAAAAAACCCGACTTCACCAGTATTCTCTGGTTATGt < 2:1033446/50‑1 (MQ=255) cTTTTTTATAAACAAAAAAACCCGACTTCACCAGTATTCTCTGGTTATGt > 1:3965924/1‑50 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGt < 1:1519660‑M2/28‑1 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGt > 1:1496917‑M2/22‑49 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGt < 1:3741855‑M2/28‑1 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGt > 2:5184943‑M2/22‑49 (MQ=255) tgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCa < 2:741227‑M2/30‑1 (MQ=255) gtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAg > 1:2426882‑M2/20‑50 (MQ=255) tcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAgg < 1:4017668‑M2/32‑1 (MQ=255) tcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAgg < 1:1692812‑M2/32‑1 (MQ=255) tcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAg < 2:1804986‑M2/31‑1 (MQ=255) tcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAg < 1:4468110‑M2/31‑1 (MQ=255) cttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGt > 1:3785697‑M2/18‑50 (MQ=255) gcgaggataagtgcCGACTTCGCCAGTATTCTCTGGTTATTTCAGGt < 1:5185539‑M2/33‑1 (MQ=255) gcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGtttt > 1:2567800‑M2/15‑50 (MQ=255) gcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGtt < 1:3719095‑M2/34‑1 (MQ=255) gcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGtt < 1:3828852‑M2/34‑1 (MQ=255) gcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGCCAGGtttt > 1:3031757‑M2/15‑50 (MQ=255) cgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGtttt < 1:2111585‑M2/36‑1 (MQ=255) cgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGtttt < 2:4963682‑M2/36‑1 (MQ=255) cgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTg < 1:4539472‑M2/37‑1 (MQ=255) gaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGc < 2:5319534‑M2/38‑1 (MQ=255) gaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGc < 1:2002204‑M2/38‑1 (MQ=255) aggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGcc < 1:3465718‑M2/39‑1 (MQ=255) aggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGcc > 1:1634964‑M2/12‑50 (MQ=255) aCAAAAAAACCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGcc > 2:512608/1‑50 (MQ=255) gataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTg < 2:1792109‑M2/41‑1 (MQ=255) aaaaaaaCCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTg > 2:3667104/1‑50 (MQ=255) ataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGc < 2:3717766‑M2/42‑1 (MQ=255) ataagtgcCGACTGCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGc < 2:241349‑M2/42‑1 (MQ=255) taagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCg < 1:1237108‑M2/43‑1 (MQ=255) agtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGaa < 2:755254‑M2/45‑1 (MQ=255) agtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGa < 1:2490157‑M2/44‑1 (MQ=255) aaCCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAAt < 1:1899320/50‑1 (MQ=255) tgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATg < 1:4923817‑M2/47‑1 (MQ=255) tgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATg > 2:98087‑M2/4‑50 (MQ=255) tgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATg < 2:829026‑M2/47‑1 (MQ=255) tgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATg < 2:2787466‑M2/47‑1 (MQ=255) gcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATg > 1:2625904‑M2/3‑49 (MQ=255) cCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGc < 2:1384327‑M2/48‑1 (MQ=255) cGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCAg < 1:2265800/50‑1 (MQ=255) | GGTGATTTGCATGTTCATAGCAAGGACCTTTTTTATAAACAAAAAAACCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCAG > NC_000913/3906550‑3906648 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |