| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4299627 | 9 (0.080) | 111 (1.010) | 62/98 | 0.0 | 91.4% | coding (1404/1467 nt) | mdtP | putative multidrug efflux pump outer membrane channel |
| ? | NC_000913 | 4325166 = | 12 (0.110) | intergenic (‑1/+132) | phnC/yjdN | phosphonate ABC transporter ATP binding subunit/conserved protein YjdN | |||||
Only 100 of 123 total aligned reads displayed.
CGACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCG > NC_000913/4299578‑4299675 | cgacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg < 2:3818577/50‑1 (MQ=255) gacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg > 1:2965362/1‑49 (MQ=255) gacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg > 1:5263734/1‑49 (MQ=255) gacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGc > 1:4669339/1‑50 (MQ=255) acgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGCt < 1:4838118/50‑1 (MQ=255) aCGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGga > 1:3571113‑M1/1‑48 (MQ=255) cGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgat < 2:1437489‑M1/50‑4 (MQ=255) gggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatg > 2:4827452‑M1/1‑46 (MQ=255) gggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatg > 1:2343455‑M1/1‑46 (MQ=255) gggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatg > 1:88313‑M1/1‑46 (MQ=255) gggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatg > 1:709372‑M1/1‑46 (MQ=255) gggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatg > 2:4081283‑M1/1‑46 (MQ=255) gggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatg > 1:2702700‑M1/1‑46 (MQ=255) ggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgc < 1:4656298‑M1/50‑6 (MQ=255) ggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatg > 2:1414940‑M1/1‑45 (MQ=255) ggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGCTTTg < 2:5031485/50‑1 (MQ=255) gACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgca < 2:2168302‑M1/50‑7 (MQ=255) gACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgca < 1:814336‑M1/50‑7 (MQ=255) gACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgca < 1:2393487‑M1/50‑7 (MQ=255) aCCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGCTTTGGa > 1:4666206/1‑50 (MQ=255) cctgcctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagc < 2:552116‑M1/50‑9 (MQ=255) cctgcctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagc > 2:1742702‑M1/1‑42 (MQ=255) ctgcctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcc > 2:2408253‑M1/1‑41 (MQ=255) ctgcctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcc < 2:3115220‑M1/50‑10 (MQ=255) tgcctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcct > 2:803269‑M1/1‑40 (MQ=255) gcctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctc > 1:1238870‑M1/1‑39 (MQ=255) gcctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctc > 1:2307508‑M1/1‑39 (MQ=255) gcctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctc > 2:1038689‑M1/1‑39 (MQ=255) cctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctcc < 1:838679‑M1/50‑13 (MQ=255) cctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcct < 1:619738‑M1/48‑11 (MQ=255) ctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccc < 2:1333843‑M1/50‑14 (MQ=255) ctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccc < 1:4138270‑M1/50‑14 (MQ=255) tgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccc > 2:4326829‑M1/1‑36 (MQ=255) tgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccc > 2:3876959‑M1/1‑36 (MQ=255) aTACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccctaa < 2:3435604‑M1/50‑17 (MQ=255) aTACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccctaa < 1:3110171‑M1/50‑17 (MQ=255) aTACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctcccta > 1:3239703‑M1/1‑34 (MQ=255) aTACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctcccta > 2:2578723‑M1/1‑34 (MQ=255) aTACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccct < 2:5114034‑M1/48‑15 (MQ=255) tACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccctaa > 1:2204106‑M1/1‑33 (MQ=255) tACCCGCCGCCCAGCGATTTCATCAACTGAATGCTTTGGATCACCcggcg < 2:2782328/50‑1 (MQ=255) aCCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaa > 1:5195201‑M1/1‑32 (MQ=255) aCCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaa > 1:3922779‑M1/1‑32 (MQ=255) cccGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaa < 1:2662209‑M1/49‑19 (MQ=255) cccGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaa > 2:1037361‑M1/1‑31 (MQ=255) ccgccgCCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaa < 1:4375669‑M1/50‑21 (MQ=255) cgccCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtgg > 2:2906638‑M1/1‑26 (MQ=255) cgccCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtgg > 1:3200053‑M1/1‑26 (MQ=255) gccCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggc < 1:4057927‑M1/50‑26 (MQ=255) gccCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggc < 1:2658733‑M1/50‑26 (MQ=255) cccAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggct < 2:3221596‑M1/50‑27 (MQ=255) cccAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggct > 2:460418‑M1/1‑24 (MQ=255) cccAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggcc > 2:1660690‑M1/1‑24 (MQ=255) ccAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctc < 1:3646996‑M1/50‑28 (MQ=255) ccAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctc < 2:47617‑M1/50‑28 (MQ=255) aGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctcca > 2:2294732‑M1/1‑21 (MQ=255) aGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctcca < 2:4686040‑M1/50‑30 (MQ=255) aGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctcca < 1:1154159‑M1/50‑30 (MQ=255) gCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccat < 2:804979‑M1/50‑31 (MQ=255) gCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccat > 2:1272097‑M1/1‑20 (MQ=255) gCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccat < 1:2472219‑M1/50‑31 (MQ=255) cGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatc > 2:4581230‑M1/1‑19 (MQ=255) cGATTTCATCAACTGAATGgatgcagcctccctaaaaaagaggctccatc > 1:2456511‑M1/1‑19 (MQ=255) gATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcg < 2:4294525‑M1/50‑33 (MQ=255) gATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcg > 1:3681008‑M1/1‑18 (MQ=255) gATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcg < 1:4024547‑M1/50‑33 (MQ=255) gATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcg > 1:2419361‑M1/1‑18 (MQ=255) gATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcg < 2:7879‑M1/50‑33 (MQ=255) aTTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgt > 1:4779300‑M1/1‑17 (MQ=255) aTTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgt > 2:2791169‑M1/1‑17 (MQ=255) aTTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgt > 2:2924550‑M1/1‑17 (MQ=255) aTTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgt > 2:3510079‑M1/1‑17 (MQ=255) aTTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgt < 2:1477195‑M1/50‑34 (MQ=255) tttCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgtg < 2:2309972‑M1/50‑35 (MQ=255) tttCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgtg > 1:1784028‑M1/1‑16 (MQ=255) tttCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgtg < 2:528038‑M1/50‑35 (MQ=255) tttCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgtg > 2:3384401‑M1/1‑16 (MQ=255) ttCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgtgg > 1:1561306‑M1/1‑15 (MQ=255) ttCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTaa > 1:5259833/1‑50 (MQ=255) tcatcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtgg < 1:2706599‑M1/49‑36 (MQ=255) catcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggc < 1:3494284‑M1/49‑37 (MQ=255) catcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggc < 2:4468673‑M1/49‑37 (MQ=255) atcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcgg < 1:1219965‑M1/50‑39 (MQ=255) atcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcg < 2:2044806‑M1/49‑38 (MQ=255) atcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcg < 1:1494587‑M1/49‑38 (MQ=255) caACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggat > 2:4386225‑M1/1‑10 (MQ=255) caACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggat > 2:4752441‑M1/1‑10 (MQ=255) aaCTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggatt < 1:2488672‑M1/50‑42 (MQ=255) aaCTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggatt < 1:1281533‑M1/50‑42 (MQ=255) aaCTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggat < 1:1428637‑M1/49‑41 (MQ=255) aCTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggatta > 1:3801720‑M1/1‑8 (MQ=255) aCTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggatta < 1:559160‑M1/50‑43 (MQ=255) tGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggattatt > 2:1978330‑M1/1‑6 (MQ=255) aaTGgatgcagcctccctaaaaaagtggctccatcgtggcggattattg < 1:4133507‑M1/49‑46 (MQ=255) aaTGgatgcagcctccctaaaaaagtggctccatcgtggcggattatt < 2:1874674‑M1/48‑45 (MQ=255) aaTGgatgcagcctccctaaaaaagtggctccatcgtggcggattatt < 1:1308750‑M1/48‑45 (MQ=255) aaTGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCtt < 1:2507984/50‑1 (MQ=255) aTGgatgcagcctccctaaaaaagtggctccatcgtggcggattattgtg < 2:3777914‑M1/50‑48 (MQ=255) aTGgatgcagcctccctaaaaaagtggctccatcgtggcggattattgtg < 1:57225‑M1/50‑48 (MQ=255) tGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCg > 1:5182107/1‑50 (MQ=255) | CGACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCG > NC_000913/4299578‑4299675 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |