| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4299627 | 9 (0.080) | 111 (1.010) | 62/98 | 0.0 | 91.4% | coding (1404/1467 nt) | mdtP | putative multidrug efflux pump outer membrane channel |
| ? | NC_000913 | 4325166 = | 12 (0.110) | intergenic (‑1/+132) | phnC/yjdN | phosphonate ABC transporter ATP binding subunit/conserved protein YjdN | |||||
Only 100 of 130 total aligned reads displayed.
GCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCGTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACG > NC_000913/4325117‑4325215 | gacgggacctgcctgatacccgccgcccagcgatttcatcaactgaatgg < 2:368026‑M2/1‑1 (MQ=255) acgggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGa > 1:3571113‑M2/49‑50 (MQ=255) acgggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGa > 2:4569415‑M2/49‑50 (MQ=255) cgggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGAt < 2:1437489‑M2/3‑1 (MQ=255) gggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATg > 1:88313‑M2/47‑50 (MQ=255) gggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATg > 1:2702700‑M2/47‑50 (MQ=255) gggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATg > 2:4081283‑M2/47‑50 (MQ=255) gggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATg > 1:2343455‑M2/47‑50 (MQ=255) ggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATg > 2:1414940‑M2/46‑49 (MQ=255) ggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGc < 1:4656298‑M2/5‑1 (MQ=255) gacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCa < 1:814336‑M2/6‑1 (MQ=255) gacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCa < 2:2168302‑M2/6‑1 (MQ=255) cctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGc > 2:1742702‑M2/43‑50 (MQ=255) cctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGc < 2:552116‑M2/8‑1 (MQ=255) ctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGcc > 2:2408253‑M2/42‑50 (MQ=255) ctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGcc < 2:3115220‑M2/9‑1 (MQ=255) tgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCt > 2:803269‑M2/41‑50 (MQ=255) ggTTTTGGCGAGCTTCTCGACACGGATAATCGTTTGCATGATGCAGCCTc > 2:602753/1‑50 (MQ=255) gcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTc > 1:2307508‑M2/40‑50 (MQ=255) gcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTc > 1:1238870‑M2/40‑50 (MQ=255) gcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTc > 2:1038689‑M2/40‑50 (MQ=255) cctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCt < 1:619738‑M2/10‑1 (MQ=255) cctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTcc < 1:838679‑M2/12‑1 (MQ=255) cctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTcc < 2:4769216‑M2/12‑1 (MQ=255) ctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTccc < 2:1333843‑M2/13‑1 (MQ=255) ctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTccc < 1:2435434‑M2/13‑1 (MQ=255) ctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTccc < 1:4138270‑M2/13‑1 (MQ=255) tgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTccc > 2:3876959‑M2/37‑49 (MQ=255) tgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTccc > 2:4326829‑M2/37‑49 (MQ=255) atacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCt < 2:5114034‑M2/14‑1 (MQ=255) atacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTa > 1:3239703‑M2/35‑49 (MQ=255) atacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTa > 2:2578723‑M2/35‑49 (MQ=255) tacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTaa > 1:2204106‑M2/34‑49 (MQ=255) gCGAGCTTCTCGACACGGATAATCGTTTGCATGATGCAGCCTCCCTaaa < 2:5274869/49‑1 (MQ=255) acccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTaaa > 1:3922779‑M2/33‑49 (MQ=255) acccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTaaa > 1:5195201‑M2/33‑49 (MQ=255) cccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTaaaa > 2:1037361‑M2/32‑49 (MQ=255) cGAGCTTCTCGACACGGATAATCGTTTGCATGATGCAGCCTCCCTaaaa > 1:3835918/1‑49 (MQ=255) ccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTg > 1:4138023‑M2/28‑50 (MQ=255) cgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTgg > 2:2906638‑M2/27‑50 (MQ=255) cgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTgg > 1:2595870‑M2/27‑50 (MQ=255) cgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTgg > 1:3200053‑M2/27‑50 (MQ=255) gcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGc < 1:2658733‑M2/25‑1 (MQ=255) gcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGc < 1:2882464‑M2/25‑1 (MQ=255) cccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGgcc > 2:1660690‑M2/25‑49 (MQ=255) cccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCt < 2:3221596‑M2/26‑1 (MQ=255) cccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCt > 2:2200467‑M2/25‑50 (MQ=255) cccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCt > 2:460418‑M2/25‑50 (MQ=255) ccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTc < 1:3646996‑M2/27‑1 (MQ=255) ccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTc < 2:47617‑M2/27‑1 (MQ=255) gACACGGATAATCGTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCa > 2:3052007/1‑50 (MQ=255) agcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCa < 1:1154159‑M2/29‑1 (MQ=255) gcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCAt < 2:804979‑M2/30‑1 (MQ=255) cgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATc < 2:138807‑M2/31‑1 (MQ=255) cgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATc > 2:4581230‑M2/20‑50 (MQ=255) cgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGAGGCTCCATc > 1:2456511‑M2/20‑50 (MQ=255) gatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCg > 1:2419361‑M2/19‑50 (MQ=255) gatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCg < 2:4294525‑M2/32‑1 (MQ=255) gatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCg < 2:7879‑M2/32‑1 (MQ=255) gatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCg > 1:3681008‑M2/19‑50 (MQ=255) gatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCg > 1:3884334‑M2/19‑50 (MQ=255) gatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCg < 1:4024547‑M2/32‑1 (MQ=255) cGGATAATCGTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGt > 2:5319960/1‑50 (MQ=255) atttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGt > 2:3510079‑M2/18‑50 (MQ=255) atttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGt > 2:2924550‑M2/18‑50 (MQ=255) atttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGt > 2:2791169‑M2/18‑50 (MQ=255) atttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGt > 1:4779300‑M2/18‑50 (MQ=255) tttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTg < 2:2309972‑M2/34‑1 (MQ=255) tttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTg > 1:2035082‑M2/17‑50 (MQ=255) tttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTg < 2:528038‑M2/34‑1 (MQ=255) tttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTg > 1:1784028‑M2/17‑50 (MQ=255) tttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTg > 2:3384401‑M2/17‑50 (MQ=255) ttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTgg > 1:1561306‑M2/16‑50 (MQ=255) tcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTgg < 1:2706599‑M2/35‑1 (MQ=255) catcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGc < 1:3494284‑M2/36‑1 (MQ=255) atcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCgg < 1:1219965‑M2/38‑1 (MQ=255) atcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCg < 2:2044806‑M2/37‑1 (MQ=255) atcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCg < 2:171304‑M2/37‑1 (MQ=255) aTCGTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGa < 2:3541407/50‑1 (MQ=255) caactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGat > 2:4752441‑M2/11‑50 (MQ=255) caactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGat > 2:4386225‑M2/11‑50 (MQ=255) cGTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGat > 1:1338058/1‑49 (MQ=255) aactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGatt < 1:1281533‑M2/41‑1 (MQ=255) aactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGatt < 1:2488672‑M2/41‑1 (MQ=255) aactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGat < 1:1428637‑M2/40‑1 (MQ=255) gTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGAGGatt < 2:4984315/49‑1 (MQ=255) actgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGatta < 1:559160‑M2/42‑1 (MQ=255) tgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattatt > 2:1978330‑M2/7‑50 (MQ=255) aatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattatt < 2:1874674‑M2/44‑1 (MQ=255) aatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATtgt < 1:605114‑M2/46‑1 (MQ=255) aatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATtgt < 2:4177536‑M2/46‑1 (MQ=255) aatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATtg < 1:4133507‑M2/45‑1 (MQ=255) atgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATtgtg < 2:3777914‑M2/47‑1 (MQ=255) atgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATtgtg < 1:57225‑M2/47‑1 (MQ=255) atgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATtgtg < 1:1408450‑M2/47‑1 (MQ=255) gatgCAGCCTCCCTAAAAAAGTGGCTCCATCTTGGCGGATTATTGTGAc < 2:101005/49‑1 (MQ=255) gatgCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAc > 1:2060043/1‑49 (MQ=255) gatgCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAc < 2:1880471/49‑1 (MQ=255) gatgCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAc < 2:1858204/49‑1 (MQ=255) gatgCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACg < 1:3042892/50‑1 (MQ=255) | GCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCGTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACG > NC_000913/4325117‑4325215 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |