| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1197136 | 9 (0.080) | 97 (1.180) +CAGATAATTCAA |
54/74 | 0.0 | 92.5% | coding (397/666 nt) | ymfD | e14 prophage; putative SAM‑dependent methyltransferase |
| ? | NC_000913 | 1223093 = | 12 (0.110) | coding (71/174 nt) | ymgI | uncharacterized protein YmgI | |||||
Only 100 of 144 total aligned reads displayed.
GATCTGCTTAACTAAAGAACGCTCGCTATTATTCAGATAATTCAAAATGAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAAT > NC_000913/1223044‑1223142 | gATCTGCTTAACTAAAGAACGCTCGCTATTATTCAGATAATTCAAAATGa < 2:2773160/50‑1 (MQ=255)ctcctgattttagtaatctcttgatgctaagaactatcagataattcaaa < 2:3799126‑M2/1‑1 (MQ=255) tcctgattttagtaatctcttgatgctaagaactatcagataattcaaAg > 2:651267‑M2/49‑50 (MQ=255) cctgattttagtaatctcttgatgctaagaactatcagataattcaaAGc > 2:2276912‑M2/48‑50 (MQ=255) ctgattttagtaatctcttgatgctaagaactatcagataattcaaAGCg < 1:1065434‑M2/4‑1 (MQ=255) ctgattttagtaatctcttgatgctaagaactatcagataattcaaAGCg < 2:2179201‑M2/4‑1 (MQ=255) tgattttagtaatctcttgatgctaagaactatcagataattcaaAGCGt > 1:3986503‑M2/46‑50 (MQ=255) tgattttagtaatctcttgatgctaagaactatcagataattcaaAGCGt > 2:4169986‑M2/46‑50 (MQ=255) gattttagtaatctcttgatgctaagaactatcagataattcaaAGCGTg > 1:2174281‑M2/45‑50 (MQ=255) cTTAACTAAAGAACGCTCGCTATTATTCAGATAATTCAAAATGAGCGt < 1:4130622/48‑1 (MQ=255) cTTAACTAAAGAACGCTCGCTATTATTCAGATAATTCAAAATGAGCGTgg < 1:3571150/50‑1 (MQ=255) attttagtaatctcttgatgctaagaactatcagataattcaaAGCGt < 2:4626604‑M2/5‑1 (MQ=255) attttagtaatctcttgatgctaagaactatcagataattcaaAGCGt < 1:743361‑M2/5‑1 (MQ=255) attttagtaatctcttgatgctaagaactatcagataattcaaAGCGTgg > 1:402375‑M2/44‑50 (MQ=255) aaCTAAAGAACGCTCGCTATTATTCAGATAATTCAAAATGAGCGTGGCtg > 1:171920/1‑50 (MQ=255) tagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtg < 1:2860018‑M2/10‑1 (MQ=255) tagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtg < 1:992442‑M2/10‑1 (MQ=255) aCTAAAGAACGCTCGCTATTATTCAGATAATTCAAAATGAGCGTGGCtgg > 1:4439136/1‑49 (MQ=255) agtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtgt > 2:4149458‑M2/39‑49 (MQ=255) agtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtgt < 1:4567494‑M2/11‑1 (MQ=255) agtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtgt < 2:1878369‑M2/11‑1 (MQ=255) gtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtgtg < 1:96526‑M2/12‑1 (MQ=255) gtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtgtg < 2:2677597‑M2/12‑1 (MQ=255) gtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtga < 2:544127‑M2/13‑1 (MQ=255) taatctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgat > 2:3666807‑M2/37‑50 (MQ=255) taatctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgat > 2:2027410‑M2/37‑50 (MQ=255) taatctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgat < 2:1019402‑M2/14‑1 (MQ=255) aatctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgat > 2:3058556‑M2/36‑49 (MQ=255) atctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgatga < 1:5234839‑M2/16‑1 (MQ=255) atctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgatga > 2:5389106‑M2/35‑50 (MQ=255) atctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgatga < 1:2628887‑M2/16‑1 (MQ=255) atctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgatg < 1:662470‑M2/15‑1 (MQ=255) atctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgatg < 1:938012‑M2/15‑1 (MQ=255) ctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgatga > 2:3224815‑M2/33‑48 (MQ=255) tcttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAg > 2:4981674‑M2/32‑50 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATa < 1:3742320‑M2/18‑1 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAg < 1:5047581‑M2/19‑1 (MQ=255) tgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGaa > 2:841363‑M2/29‑50 (MQ=255) tgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGaa > 1:2391778‑M2/29‑50 (MQ=255) gatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGaa < 2:1010479‑M2/22‑1 (MQ=255) gatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGaa < 2:4777941‑M2/22‑1 (MQ=255) gatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGa < 2:4005220‑M2/21‑1 (MQ=255) gatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAAt > 2:502845‑M2/28‑50 (MQ=255) gatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAAt > 2:2390955‑M2/28‑50 (MQ=255) atgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAAtt < 2:1674236‑M2/24‑1 (MQ=255) atgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAAtt < 1:5394120‑M2/24‑1 (MQ=255) atgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAAt > 1:1164296‑M2/27‑49 (MQ=255) atgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAAt > 2:3076940‑M2/27‑49 (MQ=255) atgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAAt < 1:3844065‑M2/23‑1 (MQ=255) tgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTa < 2:1810853‑M2/25‑1 (MQ=255) tgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTa > 2:1932175‑M2/26‑50 (MQ=255) ctATTATTCAGATAATTCAAAATGAGCGTGGCTGTGATGATAGGAATTAt > 2:3183492/1‑50 (MQ=255) ctATTATTCAGATAATTCAAAATGAGCGTGGCTGTGATGATAGGAATTAt > 1:1365772/1‑50 (MQ=255) ctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTAt < 1:4109879‑M2/26‑1 (MQ=255) ctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATg < 2:522884‑M2/27‑1 (MQ=255) aagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtt > 1:4787484‑M2/22‑50 (MQ=255) aagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtt > 2:2558629‑M2/22‑50 (MQ=255) agaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGttt > 1:3907907‑M2/21‑50 (MQ=255) agaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtt < 1:3766532‑M2/29‑1 (MQ=255) agaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGt < 1:3552950‑M2/28‑1 (MQ=255) attCAGATAATTCAAAATGAGCGTGGCTGTGATGATAGGAATTATGttt < 2:1706786/49‑1 (MQ=255) aactatcagataattcaaAGCGTGGCTGTGATGATAGGCATTATGttttt > 1:3017006‑M2/19‑50 (MQ=255) aactatcagataattcaaAGCGTGGCTGTGATGATAGGCATTATGttttt > 1:2137625‑M2/19‑50 (MQ=255) aactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGttttt < 1:4513410‑M2/32‑1 (MQ=255) aactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGttttt < 1:1313618‑M2/32‑1 (MQ=255) aactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGttttt < 2:4009102‑M2/32‑1 (MQ=255) actatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtttttt < 2:4292542‑M2/33‑1 (MQ=255) actatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtttttt < 2:870503‑M2/33‑1 (MQ=255) actatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGttttt > 2:4334747‑M2/18‑49 (MQ=255) ctatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTa < 1:1243792‑M2/34‑1 (MQ=255) ctatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTa < 1:5364934‑M2/34‑1 (MQ=255) ctatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTa < 2:122594‑M2/34‑1 (MQ=255) atcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACg > 1:4622543‑M2/15‑50 (MQ=255) atcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACg > 2:2808378‑M2/15‑50 (MQ=255) tcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGt < 1:3854339‑M2/37‑1 (MQ=255) tcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGt < 1:1865725‑M2/37‑1 (MQ=255) aTAATTCAAAATGAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGt > 1:2427288/1‑50 (MQ=255) agataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTg < 2:2033896‑M2/38‑1 (MQ=255) agataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGa < 1:1529182‑M2/39‑1 (MQ=255) gataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGaa < 2:3422261‑M2/40‑1 (MQ=255) gataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGaa < 2:490495‑M2/40‑1 (MQ=255) taattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt > 2:3363287‑M2/9‑49 (MQ=255) taattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATg < 1:2759794‑M2/42‑1 (MQ=255) cAAAATGAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATg < 2:2431018/49‑1 (MQ=255) aattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt > 2:3632318‑M2/8‑48 (MQ=255) attcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATga < 2:3773975‑M2/43‑1 (MQ=255) attcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATga < 1:2683196‑M2/43‑1 (MQ=255) aaaTGAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATgag > 1:1683117/1‑49 (MQ=255) tcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaa > 2:3637323‑M2/5‑50 (MQ=255) caaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaa > 1:2850857‑M2/4‑49 (MQ=255) caaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaa > 2:25660‑M2/4‑49 (MQ=255) aaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaata < 1:1510264‑M2/48‑1 (MQ=255) aaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaat < 2:4917040‑M2/47‑1 (MQ=255) aaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaat < 1:3695349‑M2/47‑1 (MQ=255) aAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaataa > 2:653771‑M2/2‑50 (MQ=255) aAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaataa > 1:817929‑M2/2‑50 (MQ=255) aGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaataat < 2:4735375/50‑1 (MQ=255) aGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaataat < 1:2553959/50‑1 (MQ=255) aGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaataat > 1:2573269/1‑50 (MQ=255) aGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaataat > 1:3049110/1‑50 (MQ=255) | GATCTGCTTAACTAAAGAACGCTCGCTATTATTCAGATAATTCAAAATGAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAAT > NC_000913/1223044‑1223142 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |