| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4555490 | 11 (0.100) | 136 (1.270) | 70/96 | 0.0 | 91.3% | coding (831/831 nt) | yjiC | uncharacterized protein YjiC |
| ? | NC_000913 | 4597014 = | 15 (0.140) | intergenic (+2/+136) | lgoD/opgB | L‑galactonate oxidoreductase/phosphoglycerol transferase I | |||||
Only 100 of 162 total aligned reads displayed.
GATGTGATTAACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCG > NC_000913/4596965‑4597063 | tttagctatctgtataacctgaatgttagtactcattcttcctggtagta < 2:3126834‑M2/1‑1 (MQ=255) tagctatctgtataacctgaatgttagtactcattcttcctggtagtAAg > 1:631528‑M2/48‑50 (MQ=255) gtgATTAACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAgg > 2:2608273/1‑50 (MQ=255) agctatctgtataacctgaatgttagtactcattcttcctggtagtAAgg > 1:2666770‑M2/47‑50 (MQ=255) agctatctgtataacctgaatgttagtactcattcttcctggtagtAAgg > 1:4701526‑M2/47‑50 (MQ=255) agctatctgtataacctgaatgttagtactcattcttcctggtagtAAgg > 1:563458‑M2/47‑50 (MQ=255) agctatctgtataacctgaatgttagtactcattcttcctggtagtAAg < 2:4741515‑M2/3‑1 (MQ=255) agctatctgtataacctgaatgttagtactcattcttcctggtagtAAg < 1:3569490‑M2/3‑1 (MQ=255) agctatctgtataacctgaatgttagtactcattcttcctggtagtAAg < 1:5023675‑M2/3‑1 (MQ=255) gctatctgtataacctgaatgttagtactcattcttcctggtagtAAgg < 1:1799583‑M2/4‑1 (MQ=255) gctatctgtataacctgaatgttagtactcattcttcctggtagtAAgg < 1:2125255‑M2/4‑1 (MQ=255) gctatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc < 2:520518‑M2/5‑1 (MQ=255) gctatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc < 1:2340334‑M2/5‑1 (MQ=255) gctatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 1:4843212‑M2/46‑50 (MQ=255) gctatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 2:3648724‑M2/46‑50 (MQ=255) ctatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 2:2202320‑M2/45‑49 (MQ=255) ctatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 2:2732447‑M2/45‑49 (MQ=255) tatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 1:633984‑M2/44‑48 (MQ=255) tctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 1:1720592‑M2/42‑46 (MQ=255) tctgtataacctgaatgttagtactcattcttcctggtagtAAGGCgag < 1:1462611‑M2/8‑1 (MQ=255) ctgtataacctgaatgttagtactcattcttcctggtagtAAGGCGAGat > 2:5069282‑M2/41‑50 (MQ=255) aaCAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGat > 2:3322929/1‑50 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCgaga < 1:84547‑M2/9‑1 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCgaga < 2:1857981‑M2/9‑1 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCGAGattat < 1:3689672‑M2/13‑1 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCGAGattat > 2:4226579‑M2/38‑50 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCGAGattat > 1:2450626‑M2/38‑50 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCGAGatta < 1:2539657‑M2/12‑1 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCGAGatt < 2:4180263‑M2/11‑1 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCGAGatt < 1:2301600‑M2/11‑1 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCGAGat < 1:4828401‑M2/10‑1 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCGAGat < 2:4055332‑M2/10‑1 (MQ=255) aaTCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGattat > 1:4926351/1‑50 (MQ=255) taacctgaatgttagtactcattcttcctggtagtAAGGCGAGattatt > 2:1582612‑M2/36‑49 (MQ=255) acctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTaaa < 1:3173612‑M2/17‑1 (MQ=255) acctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTaaa < 2:237913‑M2/17‑1 (MQ=255) tGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAg < 2:3004276/50‑1 (MQ=255) cctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAg > 1:1112379‑M2/33‑50 (MQ=255) ctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGt < 2:2278299‑M2/19‑1 (MQ=255) ctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGt < 1:530565‑M2/19‑1 (MQ=255) ctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGt < 1:4966921‑M2/19‑1 (MQ=255) gaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTg > 1:968334‑M2/30‑50 (MQ=255) gaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTg > 2:1258160‑M2/30‑50 (MQ=255) ttaattaaAGGCGTAATTACTTTCTGATAAGGCGAGATTATTCAAGTTGc > 1:5258508/1‑50 (MQ=255) aatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGtt < 2:737387‑M2/20‑1 (MQ=255) aatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGc > 1:2550944‑M2/29‑50 (MQ=255) aatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGc > 1:3281117‑M2/29‑50 (MQ=255) tgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCa < 1:4076479‑M2/24‑1 (MQ=255) gttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCAt > 2:1157318‑M2/26‑50 (MQ=255) ttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCAt < 1:5236658‑M2/25‑1 (MQ=255) ttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATg > 1:1665541‑M2/25‑50 (MQ=255) tagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATg > 2:2268901‑M2/24‑49 (MQ=255) agtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGc < 1:1378597‑M2/27‑1 (MQ=255) aaaGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGc < 1:1750615/49‑1 (MQ=255) gtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCa < 2:1716679‑M2/28‑1 (MQ=255) gtactcattcttccaggtagtAAGGCGAGATTATTAAAGTTGCCATGCAg > 1:2894328‑M2/22‑50 (MQ=255) ctcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCg < 1:3791998‑M2/31‑1 (MQ=255) ctcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCg < 1:2151489‑M2/31‑1 (MQ=255) ctcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGt < 1:1211430‑M2/32‑1 (MQ=255) tcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTc > 2:1229319‑M2/18‑50 (MQ=255) tcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTc > 2:2093396‑M2/18‑50 (MQ=255) attcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTcc < 1:3613785‑M2/34‑1 (MQ=255) attcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTcc < 1:4221700‑M2/34‑1 (MQ=255) attcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTcc < 1:430503‑M2/34‑1 (MQ=255) attcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTcc < 2:486711‑M2/34‑1 (MQ=255) attcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCg < 2:4556843‑M2/35‑1 (MQ=255) attcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCg < 2:2326650‑M2/35‑1 (MQ=255) ttcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgg < 2:2978140‑M2/36‑1 (MQ=255) ttcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgg > 1:3236348‑M2/15‑50 (MQ=255) tcttcctggtagtAAGGCGAGATTATTAACGTTGCCATGCAGCGTCCggg > 2:4288716‑M2/14‑50 (MQ=255) tcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCggg > 2:5379102‑M2/14‑50 (MQ=255) tcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCggg > 1:3842907‑M2/14‑50 (MQ=255) tcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCggg > 1:100110‑M2/14‑50 (MQ=255) tcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCggg > 2:4077300‑M2/14‑50 (MQ=255) ttACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgggg < 1:2973394/50‑1 (MQ=255) cttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCggg < 1:2983869‑M2/37‑1 (MQ=255) cttactggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCggg > 2:394484‑M2/13‑49 (MQ=255) ttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgggg > 1:4897210‑M2/12‑49 (MQ=255) ttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgggg > 1:3642048‑M2/12‑49 (MQ=255) cctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGaa < 1:5190275‑M2/40‑1 (MQ=255) cctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGa < 2:4856707‑M2/39‑1 (MQ=255) cTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGaa < 1:1364965/49‑1 (MQ=255) tggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgtg > 1:1015051‑M2/8‑50 (MQ=255) gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgtgt < 2:5323247‑M2/44‑1 (MQ=255) gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgtg < 1:3484490‑M2/43‑1 (MQ=255) gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGtt < 1:1096239‑M2/45‑1 (MQ=255) gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGtt > 1:3645395‑M2/6‑50 (MQ=255) cTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGtt > 1:4749747/1‑50 (MQ=255) tagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTg > 2:196550‑M2/5‑50 (MQ=255) tagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTg > 1:3086782‑M2/5‑50 (MQ=255) tGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTg > 1:4749407/1‑50 (MQ=255) agtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTgg > 2:1144756‑M2/4‑50 (MQ=255) tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGc > 2:4335592‑M2/2‑50 (MQ=255) tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGc < 1:294512‑M2/49‑1 (MQ=255) tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGc < 2:4008693‑M2/49‑1 (MQ=255) tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGc < 2:1653669‑M2/49‑1 (MQ=255) tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGc > 2:541452‑M2/2‑50 (MQ=255) tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGc < 2:2109918‑M2/49‑1 (MQ=255) aaGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGgcg > 1:3377903/1‑50 (MQ=255) aaGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGgcg > 1:1914641/1‑50 (MQ=255) | GATGTGATTAACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCG > NC_000913/4596965‑4597063 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |