| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,400,325 | Δ81,931 bp | [abgT]–[azoR] | 87 genes [abgT], abgB, abgA, abgR, mcaS, smrA, dgcM, zntB, fnrS, ynaL, dbpA, ttcA, intR, xisR, rcbA, ralA, ralR, recT, recE, racC, ydaE, kilR, sieB, ydaF, ydaG, racR, ydaS, ydaT, ydaU, ydaV, ydaW, rzpR, rzoR, trkG, ynaK, ydaY, ynaA, lomR, insH‑5, lomR, stfR, tfaR, pinR, ynaE, ynaM, ttcC, uspF, ompN, micC, ydbK, ydbJ, hslJ, ldhA, ydbH, ynbE, ydbL, feaR, feaB, tynA, paaZ, paaA, paaB, paaC, paaD, paaE, paaF, paaG, paaH, paaI, paaJ, paaK, paaX, paaY, ynbG, ydbA, insD‑2, insC‑2, ydbA, insI‑2, ydbA, pdxI, ydbD, ynbA, ynbB, ynbC, ynbD, [azoR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1400325 | 1482255 | 81931 | 163 [0] | [0] 163 | [abgT]–[azoR] | [abgT],abgB,abgA,abgR,mcaS,smrA,dgcM,zntB,fnrS,ynaL,dbpA,ttcA,intR,xisR,rcbA,ralA,ralR,recT,recE,racC,ydaE,kilR,sieB,ydaF,ydaG,racR,ydaS,ydaT,ydaU,ydaV,ydaW,rzpR,rzoR,trkG,ynaK,ydaY,ynaA,lomR,insH‑5,lomR,stfR,tfaR,pinR,ynaE,ynaM,ttcC,uspF,ompN,micC,ydbK,ydbJ,hslJ,ldhA,ydbH,ynbE,ydbL,feaR,feaB,tynA,paaZ,paaA,paaB,paaC,paaD,paaE,paaF,paaG,paaH,paaI,paaJ,paaK,paaX,paaY,ynbG,ydbA,insD‑2,insC‑2,ydbA,insI‑2,ydbA,pdxI,ydbD,ynbA,ynbB,ynbC,ynbD,[azoR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1400324 | 0 (0.000) | 161 (1.060) | 64/98 | 0.0 | 100% | coding (1450/1527 nt) | abgT | p‑aminobenzoyl glutamate:H(+) symporter |
| ? | NC_000913 | 1482256 = | 0 (0.000) | coding (605/606 nt) | azoR | FMN dependent NADH:quinone oxidoreductase | |||||
Only 100 of 161 total aligned reads displayed.
CCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1400275‑1400324‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTT > NC_000913/1482256‑1482304 CCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTA < 2:4204923/50‑1CCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTA < 2:5622603/50‑1 CTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTAT < 2:735539/50‑1 CTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTAT < 1:2861453/50‑1 TCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATG < 1:1641637/48‑1 GGCAGACCGACAAGATTCCACGCCAGC‑ACATC‑GCAGCCATACTATGCAG < 2:826083/49‑1 GGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAG < 2:4941413/49‑1 GGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAG > 2:1397227/1‑49 GCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAA < 1:5508557/50‑1 GCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGA > 1:4047875/1‑49 GCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGA > 2:1952770/1‑49 CAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAA < 1:1834418/50‑1 CAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAA < 2:3306493/50‑1 CAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAA < 2:5566003/50‑1 CAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAA < 1:1893102/50‑1 CAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAA < 1:1264246/50‑1 CAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAA < 1:5316211/50‑1 AGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAAC < 1:376103/50‑1 AGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAA > 2:4631120/1‑49 AGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAA > 1:2426182/1‑49 GACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACA < 1:4117980/50‑1 GACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAAC > 1:3181599/1‑49 GACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAAC > 1:4802010/1‑49 GACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAAC > 2:928025/1‑49 ACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAA > 1:5493103/1‑50 ACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAA > 1:260267/1‑50 ACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAA > 2:5683845/1‑50 CCGACAAGATACCTCGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAAT < 2:5088848/50‑1 CCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAAT < 1:4283948/50‑1 CGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATG > 1:1107489/1‑50 CGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATG < 2:5786179/50‑1 CGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATG > 1:2266401/1‑50 GACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGC > 2:45990/1‑50 GACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGC < 1:585494/50‑1 GACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGC < 2:1275958/50‑1 ACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCT < 2:2853022/50‑1 ACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCT > 2:5665527/1‑50 ACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCT > 1:1943019/1‑50 ACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCT < 1:604097/50‑1 ACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCT < 1:3574601/50‑1 ACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCT > 2:3528288/1‑50 CAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTG > 1:4057908/1‑50 CAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTG > 1:2576239/1‑50 AAGATACTACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGT > 2:3345200/1‑50 AAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGT < 1:273046/50‑1 AGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTC > 2:1557066/1‑50 AGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTC > 2:3011683/1‑50 GATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCG < 1:1076157/50‑1 GATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTC > 1:3661638/1‑49 ATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGA < 1:3236636/50‑1 ATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGA < 2:3029564/50‑1 TACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGAT > 1:5379837/1‑50 TACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGAT < 1:2141555/50‑1 TACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGAT > 1:2096944/1‑50 TACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGAT < 1:1653884/50‑1 CCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGG < 1:5767370/50‑1 CCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATG < 1:3606452/49‑1 CCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATG < 2:5229456/49‑1 CCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATG < 1:3347963/49‑1 CACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGC < 2:4984807/50‑1 CACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGC < 2:3772893/50‑1 CACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGC < 1:130644/50‑1 CACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGC < 1:3072973/50‑1 ACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCT < 2:3848798/50‑1 ACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCT < 1:4112691/50‑1 ACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCT < 1:4436480/50‑1 ACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCT > 2:3154753/1‑50 GCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGC > 2:5329329/1‑50 GCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGC < 1:434366/50‑1 GCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGC < 1:5692305/50‑1 tcGCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTC < 1:4415993/48‑1 cGCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGT > 2:4897958/2‑48 GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAG < 2:2677715/50‑1 GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGT > 2:4357929/1‑47 GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGT > 1:503527/1‑47 CAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGA < 2:2493793/50‑1 CAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGA > 2:1770621/1‑50 CAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGA > 1:639332/1‑50 CAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGA < 2:852243/50‑1 AGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAC > 1:3927090/1‑50 AGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAC > 2:3844534/1‑50 AGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAC > 1:2600604/1‑50 AGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAC < 2:2780192/50‑1 AGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAC < 1:1174365/50‑1 GCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACT < 1:1069121/50‑1 GCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACT > 2:4033615/1‑50 GCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGGCAGACT > 2:2929904/1‑50 CCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTG < 1:5755457/50‑1 ATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTG > 1:3153465/1‑50 ATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTG < 1:2861353/50‑1 ATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTG < 1:4335796/50‑1 ATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTG < 1:889406/50‑1 ATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTG < 1:863625/50‑1 TACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGC > 2:4077511/1‑50 TACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGC < 2:2193954/50‑1 TACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGC < 1:4858500/50‑1 ACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCT > 1:1482108/1‑50 ACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCT > 1:4640969/1‑50 CTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTT < 1:348307/50‑1 CTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCT < 2:5783266/49‑1 CCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1400275‑1400324‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTT > NC_000913/1482256‑1482304 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |