Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,400,325 Δ81,931 bp [abgT]–[azoR] 87 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1400325 1482255 81931 163 [0] [0] 163 [abgT]–[azoR] [abgT],abgB,abgA,abgR,mcaS,smrA,dgcM,zntB,fnrS,ynaL,dbpA,ttcA,intR,xisR,rcbA,ralA,ralR,recT,recE,racC,ydaE,kilR,sieB,ydaF,ydaG,racR,ydaS,ydaT,ydaU,ydaV,ydaW,rzpR,rzoR,trkG,ynaK,ydaY,ynaA,lomR,insH‑5,lomR,stfR,tfaR,pinR,ynaE,ynaM,ttcC,uspF,ompN,micC,ydbK,ydbJ,hslJ,ldhA,ydbH,ynbE,ydbL,feaR,feaB,tynA,paaZ,paaA,paaB,paaC,paaD,paaE,paaF,paaG,paaH,paaI,paaJ,paaK,paaX,paaY,ynbG,ydbA,insD‑2,insC‑2,ydbA,insI‑2,ydbA,pdxI,ydbD,ynbA,ynbB,ynbC,ynbD,[azoR]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 14003240 (0.000)161 (1.060) 64/98 0.0 100% coding (1450/1527 nt) abgT p‑aminobenzoyl glutamate:H(+) symporter
?NC_000913 1482256 = 0 (0.000)coding (605/606 nt) azoR FMN dependent NADH:quinone oxidoreductase

Only 100 of 163 total aligned reads displayed.

GACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGACTAACGAATAGTAAGTACCC  >  NC_000913/1400273‑1400373
                                                   |                                                 
gACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac                                                   <  1:1154857/50‑1 (MQ=255)
 acctATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACt                                                  <  1:4423261‑M1/49‑2 (MQ=255)
  ccTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACta                                                 <  2:5622603‑M1/50‑3 (MQ=255)
   cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat                                                >  2:4478983‑M1/1‑47 (MQ=255)
   cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat                                                <  1:2861453‑M1/50‑4 (MQ=255)
   cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat                                                <  1:1847932‑M1/50‑4 (MQ=255)
   cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat                                                <  2:735539‑M1/50‑4 (MQ=255)
     aTCGGCAGACCGACAAGATACCACGCCAGC‑CCATC‑GCAGCCATACtatg                                               >  2:5253629‑M1/1‑45 (MQ=255)
      tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg                                               <  1:1722366‑M1/48‑5 (MQ=255)
      tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg                                               >  1:3222383‑M1/1‑44 (MQ=255)
        ggCAGACCGACAAGATTCCACGCCAGC‑ACATC‑GCAGCCATACtatgcag                                            <  2:826083‑M1/49‑8 (MQ=255)
        ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcag                                            <  1:1223719‑M1/49‑8 (MQ=255)
        ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcag                                            >  1:392849‑M1/1‑42 (MQ=255)
         gCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaa                                          <  1:5508557‑M1/50‑10 (MQ=255)
          cAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa                                         <  1:1893102‑M1/50‑11 (MQ=255)
          cAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa                                         <  2:5566003‑M1/50‑11 (MQ=255)
           aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaac                                        <  1:376103‑M1/50‑12 (MQ=255)
           aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa                                         >  1:635965‑M1/1‑39 (MQ=255)
            gACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaaca                                       <  1:4117980‑M1/50‑13 (MQ=255)
            gACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaac                                        >  1:4802010‑M1/1‑38 (MQ=255)
            gACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaac                                        >  1:3181599‑M1/1‑38 (MQ=255)
            gACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaac                                        >  2:928025‑M1/1‑38 (MQ=255)
             aCCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaa                                      >  1:5493103‑M1/1‑37 (MQ=255)
             aCCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaa                                      >  1:260267‑M1/1‑37 (MQ=255)
             aCCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaa                                      >  2:4056259‑M1/1‑37 (MQ=255)
             aCCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaa                                      >  2:5683845‑M1/1‑37 (MQ=255)
              ccGACAAGATACCTCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaat                                     <  2:5088848‑M1/50‑15 (MQ=255)
              ccGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaat                                     <  1:4283948‑M1/50‑15 (MQ=255)
               cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg                                    >  1:1107489‑M1/1‑35 (MQ=255)
               cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg                                    <  1:3659610‑M1/50‑16 (MQ=255)
               cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg                                    <  2:5786179‑M1/50‑16 (MQ=255)
               cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg                                    <  1:2402678‑M1/50‑16 (MQ=255)
                gACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgc                                   >  2:45990‑M1/1‑34 (MQ=255)
                gACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgc                                   <  1:585494‑M1/50‑17 (MQ=255)
                gACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgc                                   <  2:1275958‑M1/50‑17 (MQ=255)
                gACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgc                                   >  2:3978432‑M1/1‑34 (MQ=255)
                 aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct                                  <  1:258693‑M1/50‑18 (MQ=255)
                 aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct                                  >  2:3528288‑M1/1‑33 (MQ=255)
                  cAAGATACCACGCCAGC‑GCATC‑GCAGCCATACtatgcagaaacaatgctg                                 <  2:5578746‑M1/50‑19 (MQ=255)
                  cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg                                 >  1:2576239‑M1/1‑32 (MQ=255)
                  cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg                                 >  1:4057908‑M1/1‑32 (MQ=255)
                  cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg                                 <  1:2705008‑M1/50‑19 (MQ=255)
                  cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg                                 <  2:4293105‑M1/50‑19 (MQ=255)
                  cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg                                 <  1:3110394‑M1/50‑19 (MQ=255)
                  cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg                                 <  1:1283221‑M1/50‑19 (MQ=255)
                   aaGATACTACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt                                >  2:3345200‑M1/1‑31 (MQ=255)
                   aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt                                >  2:1414590‑M1/1‑31 (MQ=255)
                   aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt                                >  2:4981815‑M1/1‑31 (MQ=255)
                    aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc                               <  2:3338553‑M1/50‑21 (MQ=255)
                    aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc                               >  2:3011683‑M1/1‑30 (MQ=255)
                    aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc                               >  2:1557066‑M1/1‑30 (MQ=255)
                     gATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcg                              <  1:1076157‑M1/50‑22 (MQ=255)
                     gATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcg                              <  1:1986039‑M1/50‑22 (MQ=255)
                      aTACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcga                             <  1:281729‑M1/50‑23 (MQ=255)
                      aTACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcga                             >  1:2266058‑M1/1‑28 (MQ=255)
                       tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat                            <  1:2141555‑M1/50‑24 (MQ=255)
                       tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat                            <  1:1653884‑M1/50‑24 (MQ=255)
                       tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat                            >  1:5379837‑M1/1‑27 (MQ=255)
                         ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatgg                          <  1:5767370‑M1/50‑26 (MQ=255)
                         ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatg                           <  1:3606452‑M1/49‑25 (MQ=255)
                         ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatg                           <  2:5014686‑M1/49‑25 (MQ=255)
                         ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatg                           <  1:3347963‑M1/49‑25 (MQ=255)
                          cACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggc                         <  1:130644‑M1/50‑27 (MQ=255)
                           aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct                        <  1:4112691‑M1/50‑28 (MQ=255)
                           aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct                        >  2:3154753‑M1/1‑23 (MQ=255)
                           aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct                        <  2:310832‑M1/50‑28 (MQ=255)
                             gCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctgc                      <  1:434366‑M1/50‑30 (MQ=255)
                             gCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctgc                      <  1:5692305‑M1/50‑30 (MQ=255)
                                        tcgcagccaTACtatgcagaaacaatgctgtcgatggctgcttttgcgtc             <  1:4415993‑M1/48‑39 (MQ=255)
                                         cgcagccATACtatgcagaaacaatgctgtcgatggctgcttttgcgt              >  2:4897958‑M1/2‑11 (MQ=255)
                                         cgcagccATACtatgcagaaacaatgctgtcgatggctgcttttgcgt              >  2:1967449‑M1/2‑11 (MQ=255)
                                          gcagcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcag           <  2:2677715‑M1/50‑41 (MQ=255)
                                          gcagcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtca            <  1:5276413‑M1/49‑40 (MQ=255)
                                          gcagcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgt              >  1:503527‑M1/1‑10 (MQ=255)
                                          gcagcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgt              >  1:3497937‑M1/1‑10 (MQ=255)
                                           cagcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcaga          >  1:639332‑M1/1‑9 (MQ=255)
                                           cagcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcaga          <  2:852243‑M1/50‑42 (MQ=255)
                                           cagcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcaga          <  2:2866779‑M1/50‑42 (MQ=255)
                                           cagcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcaga          <  2:2493793‑M1/50‑42 (MQ=255)
                                           cagcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcaga          >  2:1770621‑M1/1‑9 (MQ=255)
                                           cagcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcaga          >  2:4808725‑M1/1‑9 (MQ=255)
                                            agcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagac         <  2:2780192‑M1/50‑43 (MQ=255)
                                            agcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagac         >  2:3844534‑M1/1‑8 (MQ=255)
                                            agcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagac         >  1:3927090‑M1/1‑8 (MQ=255)
                                             gcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagact        <  1:1069121‑M1/50‑44 (MQ=255)
                                             gcCATACtatgcagaaacaatgctgtcgatggctgcttttgcggcagact        >  2:2929904‑M1/1‑7 (MQ=255)
                                              ccATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactg       <  2:381354‑M1/50‑45 (MQ=255)
                                              ccATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactg       <  1:5755457‑M1/50‑45 (MQ=255)
                                               cATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgt      <  2:5664677‑M1/50‑46 (MQ=255)
                                               cATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgt      <  1:1565657‑M1/50‑46 (MQ=255)
                                                aTACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtg     <  1:889406‑M1/50‑47 (MQ=255)
                                                aTACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtg     <  1:863625‑M1/50‑47 (MQ=255)
                                                 tACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtgc    >  2:4077511‑M1/1‑3 (MQ=255)
                                                 tACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtgc    <  1:2877989‑M1/50‑48 (MQ=255)
                                                 tACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtgc    <  1:4858500‑M1/50‑48 (MQ=255)
                                                 tACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtgc    <  2:2193954‑M1/50‑48 (MQ=255)
                                                  aCtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtgct   >  1:4640969‑M1/1‑2 (MQ=255)
                                                   ctatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtgctt  <  1:348307‑M1/50‑50 (MQ=255)
                                                   ctatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtgctt  >  1:4322710‑M1/1‑1 (MQ=255)
                                                   ctatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtgct   <  2:5783266‑M1/49‑49 (MQ=255)
                                                   |                                                 
GACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGACTAACGAATAGTAAGTACCC  >  NC_000913/1400273‑1400373

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑