| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,962,566 | Δ16,764 bp | flhE–insA‑5 | 17 genes flhE, flhA, flhB, cheZ, cheY, cheB, cheR, tap, tar, cheW, cheA, motB, motA, flhC, flhD, insB‑5, insA‑5 |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1962566 | 1979329 | 16764 | 169 [0] | [0] 168 | flhE–insA‑5 | flhE,flhA,flhB,cheZ,cheY,cheB,cheR,tap,tar,cheW,cheA,motB,motA,flhC,flhD,insB‑5,insA‑5 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1962565 | 0 (0.000) | 166 (1.120) | 73/96 | 0.0 | 100% | intergenic (+105/+15) | yecT/flhE | protein YecT/flagellar protein |
| ? | NC_000913 | 1979330 = | 0 (0.000) | intergenic (‑115/‑423) | insA‑5/uspC | IS1 protein InsA/universal stress protein C | |||||
Only 100 of 169 total aligned reads displayed.
AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1962516‑1962565‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT > NC_000913/1979330‑1979378 AGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTC < 1:4071657/50‑1 AGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTC < 1:694916/50‑1 CATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCT < 1:325065/50‑1 CATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGC > 2:676168/1‑49 ATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTA > 1:5032632/1‑50 TCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTAC < 1:4212586/50‑1 TCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTAC > 2:1033594/1‑50 TCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTAC < 1:3751094/50‑1 CGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACG > 2:3947555/1‑50 GAGCCTTTTTCACTGAGTTATTAACCATACTCGCGAGCGCGTCGCTACG < 2:753874/49‑1 GAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGC > 2:1308847/1‑50 GAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGC < 2:3476032/50‑1 GAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGC > 2:3195043/1‑50 GAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGC > 1:3601771/1‑50 AGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGC > 2:5430991/1‑49 AGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGC > 2:5265612/1‑49 AGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGC > 2:415009/1‑49 GCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTA < 1:1210582/50‑1 GCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTA < 2:660258/50‑1 GCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTA < 1:843030/50‑1 CCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAG < 1:3322411/50‑1 CTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGC < 1:5414177/50‑1 TTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGC > 1:3670602/1‑49 TTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGC > 1:3840151/1‑49 TTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGC > 1:5593573/1‑48 TTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCA < 1:2993026/48‑1 TTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCA < 2:4592900/48‑1 TTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCA < 2:1447327/48‑1 TTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAG < 2:705789/49‑1 TTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAG < 2:1467746/49‑1 TCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGC > 2:2270225/1‑49 TCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGC > 1:4141634/1‑49 CACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCA > 1:5510770/1‑49 CACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCA > 1:2390382/1‑49 ACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAA < 1:836902/50‑1 ACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAA > 2:1151723/1‑49 ACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAA < 1:5077041/49‑1 ACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAA < 2:5798925/49‑1 CTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAA < 2:4817824/50‑1 CTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAA < 2:92622/50‑1 TGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAA > 1:2205634/1‑50 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATG < 1:4094493/50‑1 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT < 2:311460/49‑1 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT > 2:3747867/1‑49 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT > 1:5661263/1‑49 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT < 1:5747522/49‑1 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT < 1:5059736/49‑1 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAA < 1:3148540/48‑1 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAA < 2:1864233/48‑1 GTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGA < 2:3047324/50‑1 TTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAA < 1:2247803/50‑1 TTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGA > 2:3345877/1‑49 TATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAA > 1:5838734/1‑50 ATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAA < 2:5309318/49‑1 ATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAA < 2:4179805/49‑1 TTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAA > 1:2630911/1‑48 TTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAA > 1:3524/1‑48 AAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAG > 2:4108881/1‑49 ACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAA < 1:1334395/50‑1 ACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAA < 2:5420216/50‑1 ACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAA > 1:3631936/1‑50 CATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAAT < 2:5010194/50‑1 CATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAAT < 1:4771093/50‑1 ATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATA < 1:4332639/50‑1 ATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAAT > 1:3899665/1‑49 TACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAA < 1:1773982/50‑1 TACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAA < 1:5774316/50‑1 TACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAA < 2:3724209/50‑1 CTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATC > 1:4535422/1‑50 CTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATC < 1:3217780/50‑1 TCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATC > 2:5178442/1‑49 CGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCG > 2:3239671/1‑49 GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGA > 2:2611874/1‑49 GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGA < 1:1571337/49‑1 GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCG < 1:519953/48‑1 GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCG < 2:163688/48‑1 GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCG < 2:586990/48‑1 GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCG < 2:1355504/48‑1 CGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAA < 2:49399/50‑1 CGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAA < 1:4554814/50‑1 CGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAA > 1:4653989/1‑50 CGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAA < 1:2294089/50‑1 CGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAA > 1:5163669/1‑50 GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAT < 1:5602460/50‑1 GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAT > 1:2088644/1‑50 GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAT > 2:3616644/1‑50 AGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATG > 2:2735401/1‑50 AGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATG < 1:257097/50‑1 GCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGG < 1:5315845/50‑1 GCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGG < 2:5653834/50‑1 GCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGG < 1:3492543/50‑1 CGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGG < 1:3562496/50‑1 GCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGA < 1:5514496/50‑1 GCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGA < 2:426144/50‑1 CGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAT < 1:4442449/50‑1 CGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAT < 1:2838194/50‑1 CGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAT < 1:4632050/50‑1 CGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAT < 2:1931346/50‑1 GTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATG > 2:1418915/1‑50 TCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT < 1:161459/50‑1 AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1962516‑1962565‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT > NC_000913/1979330‑1979378 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |