| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,962,566 | Δ16,764 bp | flhE–insA‑5 | 17 genes flhE, flhA, flhB, cheZ, cheY, cheB, cheR, tap, tar, cheW, cheA, motB, motA, flhC, flhD, insB‑5, insA‑5 |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1962566 | 1979329 | 16764 | 169 [0] | [0] 168 | flhE–insA‑5 | flhE,flhA,flhB,cheZ,cheY,cheB,cheR,tap,tar,cheW,cheA,motB,motA,flhC,flhD,insB‑5,insA‑5 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1962565 | 0 (0.000) | 166 (1.120) | 73/96 | 0.0 | 100% | intergenic (+105/+15) | yecT/flhE | protein YecT/flagellar protein |
| ? | NC_000913 | 1979330 = | 0 (0.000) | intergenic (‑115/‑423) | insA‑5/uspC | IS1 protein InsA/universal stress protein C | |||||
Only 100 of 168 total aligned reads displayed.
TAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT > NC_000913/1979281‑1979379 | agacatcgagcctttttcactgagttattaaacatactcgcgagcgcgtc < 1:5144822‑M2/1‑1 (MQ=255)agacatcgagcctttttcactgagttattaaacatactcgcgagcgcgtc < 1:694916‑M2/1‑1 (MQ=255)agacatcgagcctttttcactgagttattaaacatactcgcgagcgcgtc < 1:4071657‑M2/1‑1 (MQ=255) catcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgct < 2:334975‑M2/4‑1 (MQ=255) catcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgc > 2:676168‑M2/47‑49 (MQ=255) catcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgc > 1:5766194‑M2/47‑49 (MQ=255) catcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgc > 2:5107067‑M2/47‑49 (MQ=255) atcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgcta < 2:4203022‑M2/5‑1 (MQ=255) atcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgcta > 1:3522312‑M2/46‑50 (MQ=255) tcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctac < 1:3751094‑M2/6‑1 (MQ=255) tcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctac < 2:4103536‑M2/6‑1 (MQ=255) tcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctac < 1:4212586‑M2/6‑1 (MQ=255) tcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctac < 2:1198138‑M2/6‑1 (MQ=255) tcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctac > 2:1033594‑M2/45‑50 (MQ=255) cgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctacg > 2:3947555‑M2/44‑50 (MQ=255) gagcctttttcactgagttattaaccatactcgcgagcgcgtcgctacg < 2:753874‑M2/7‑1 (MQ=255) gagcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgc < 1:3619715‑M2/8‑1 (MQ=255) gagcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgc > 1:3601771‑M2/43‑50 (MQ=255) gagcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgc > 2:3195043‑M2/43‑50 (MQ=255) agcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgct < 2:165060‑M2/9‑1 (MQ=255) agcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgct < 1:762851‑M2/9‑1 (MQ=255) agcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgct < 2:3630820‑M2/9‑1 (MQ=255) agcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgc > 2:5430991‑M2/42‑49 (MQ=255) gcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgcta < 1:1210582‑M2/10‑1 (MQ=255) gcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgcta < 1:843030‑M2/10‑1 (MQ=255) gcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgcta < 2:660258‑M2/10‑1 (MQ=255) cctttttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTag < 1:3322411‑M2/11‑1 (MQ=255) cctttttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTag < 1:4591909‑M2/11‑1 (MQ=255) ctttttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTag > 2:1362059‑M2/39‑49 (MQ=255) tttttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagc > 1:3670602‑M2/38‑49 (MQ=255) tttttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagc > 1:3840151‑M2/38‑49 (MQ=255) tttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagca < 1:2993026‑M2/13‑1 (MQ=255) ttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaag < 1:5349421‑M2/15‑1 (MQ=255) ttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaag < 2:1467746‑M2/15‑1 (MQ=255) ttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaag < 2:705789‑M2/15‑1 (MQ=255) tcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaagc > 2:2270225‑M2/34‑49 (MQ=255) cactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaagca > 1:2390382‑M2/33‑49 (MQ=255) actgagttattaaacatactcgcgagcgcgtCGCTACGCTAgcaagcaa < 2:5798925‑M2/18‑1 (MQ=255) actgagttattaaacatactcgcgagcgcgtCGCTACGCTAgcaagcaa < 1:5077041‑M2/18‑1 (MQ=255) ctgagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaaa < 2:92622‑M2/20‑1 (MQ=255) ctgagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaaa < 2:4817824‑M2/20‑1 (MQ=255) tgagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaaaa > 1:2205634‑M2/30‑50 (MQ=255) gagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAAt > 2:143120‑M2/29‑50 (MQ=255) agttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaaaa < 1:3148540‑M2/21‑1 (MQ=255) agttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaaaa < 2:4872533‑M2/21‑1 (MQ=255) agttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaaaa < 1:5416618‑M2/21‑1 (MQ=255) agttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAAt < 1:5747522‑M2/22‑1 (MQ=255) agttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAAt > 1:5661263‑M2/28‑49 (MQ=255) agttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAAt < 1:5059736‑M2/22‑1 (MQ=255) agttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATg < 1:4094493‑M2/23‑1 (MQ=255) gttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGa < 2:3047324‑M2/24‑1 (MQ=255) ttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGaa < 1:2247803‑M2/25‑1 (MQ=255) ttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGaa < 2:3728730‑M2/25‑1 (MQ=255) tattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGaaa > 1:5838734‑M2/25‑50 (MQ=255) attaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGaaa < 2:5309318‑M2/26‑1 (MQ=255) attaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGaaa < 2:4179805‑M2/26‑1 (MQ=255) ttaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGaaa > 1:5518444‑M2/23‑48 (MQ=255) ttaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGaaa > 1:2630911‑M2/23‑48 (MQ=255) aaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAg > 1:4124334‑M2/21‑49 (MQ=255) aacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAgg < 1:4782882‑M2/30‑1 (MQ=255) aacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAgg > 2:4122714‑M2/20‑49 (MQ=255) aacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGa < 1:4428831‑M2/31‑1 (MQ=255) acatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaa < 1:1334395‑M2/32‑1 (MQ=255) acatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaa < 2:5420216‑M2/32‑1 (MQ=255) acatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaa < 2:1100500‑M2/32‑1 (MQ=255) catactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaat < 1:4771093‑M2/33‑1 (MQ=255) atactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaata < 1:5600584‑M2/34‑1 (MQ=255) atactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaata < 1:4332639‑M2/34‑1 (MQ=255) atactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaat > 1:3899665‑M2/17‑49 (MQ=255) tactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataa < 1:1773982‑M2/35‑1 (MQ=255) actcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat > 2:320551‑M2/15‑50 (MQ=255) ctcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATc < 1:3217780‑M2/37‑1 (MQ=255) ctcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATc > 1:4535422‑M2/14‑50 (MQ=255) tcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATc > 2:5178442‑M2/13‑49 (MQ=255) gcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCg < 1:519953‑M2/38‑1 (MQ=255) gcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCg < 2:1355504‑M2/38‑1 (MQ=255) gcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCg < 2:586990‑M2/38‑1 (MQ=255) gcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGa < 1:1571337‑M2/39‑1 (MQ=255) gcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGa > 2:2611874‑M2/11‑49 (MQ=255) cgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa < 1:4554814‑M2/41‑1 (MQ=255) cgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa < 1:2294089‑M2/41‑1 (MQ=255) cgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa > 1:4653989‑M2/10‑50 (MQ=255) gagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt > 1:2088644‑M2/9‑50 (MQ=255) gagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt > 2:4941717‑M2/9‑50 (MQ=255) gagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt > 2:3616644‑M2/9‑50 (MQ=255) agcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg > 2:2735401‑M2/8‑50 (MQ=255) agcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg < 2:1483478‑M2/43‑1 (MQ=255) agcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg < 1:257097‑M2/43‑1 (MQ=255) gcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg < 1:3492543‑M2/44‑1 (MQ=255) gcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg < 1:5315845‑M2/44‑1 (MQ=255) gcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg < 2:5653834‑M2/44‑1 (MQ=255) cgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATggg < 1:3562496‑M2/45‑1 (MQ=255) gcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGa < 2:3334517‑M2/46‑1 (MQ=255) gcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGa < 1:5514496‑M2/46‑1 (MQ=255) gcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGa < 1:3249953‑M2/46‑1 (MQ=255) cgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt < 1:2838194‑M2/47‑1 (MQ=255) cgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt < 2:1931346‑M2/47‑1 (MQ=255) gtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATg < 2:4334221‑M2/48‑1 (MQ=255) tCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGt < 1:161459‑M2/49‑1 (MQ=255) cgctacgctaGCAAGCAAAACTGAAACAGGAATAATCGAAATGGGCTGtt > 2:1971421/1‑50 (MQ=255) | TAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT > NC_000913/1979281‑1979379 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |