| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,872,030 | Δ1,437 bp | [dgcJ] | [dgcJ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1872030 | 1873466 | 1437 | 223 [0] | [0] 219 | [dgcJ] | [dgcJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1872029 | 0 (0.000) | 218 (1.470) | 84/96 | 0.0 | 100% | intergenic (+169/‑12) | cdgI/dgcJ | putative c‑di‑GMP binding protein CdgI/putative diguanylate cyclase DgcJ |
| ? | NC_000913 | 1873467 = | 0 (0.000) | coding (1427/1491 nt) | dgcJ | putative diguanylate cyclase DgcJ | |||||
Only 100 of 219 total aligned reads displayed.
GGCTTCTCTTCCGGTATTTACGCGATGAAAGAAAACGATACGTTACATGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACAA > NC_000913/1873418‑1873515 | ggccgcaatcgaactttatctggttttctcgtttcactaaccgaaggaga < 1:289387‑M2/1‑1 (MQ=255) gccgcaatcgaactttatctggttttctcgtttcactaaccgaaggagAt < 1:5273158‑M2/2‑1 (MQ=255) ccgcaatcgagctttatctggttttctcgtttcactaaccgaaggagATg > 1:3542816‑M2/48‑50 (MQ=255) ccgcaatcgaactttatctggttttctcgtttcactaaccgaaggagATg < 2:3737872‑M2/3‑1 (MQ=255) ccgcaatcgaactttatctggttttctcgtttcactaaccgaaggagATg < 1:2350304‑M2/3‑1 (MQ=255) gcaatcgaactttatctggttttctcgtttcactaaccgaaggagATGCg < 1:1128038‑M2/5‑1 (MQ=255) gcaatcgaactttatctggttttctcgtttcactaaccgaaggagATGCg > 1:916748‑M2/46‑50 (MQ=255) gcaatcgaactttatctggttttctcgtttcactaaccgaaggagATGCg > 2:1933347‑M2/46‑50 (MQ=255) gcaatcgaactttatctggttttctcgtttcactaaccgaaggagATGCg < 1:2034434‑M2/5‑1 (MQ=255) caatcgaactttatctggttttctcgtttcactaaccgaaggagATGCg > 2:794657‑M2/45‑49 (MQ=255) aatcgaactttatctggttttctcgtttcactaaccgaaggagATGCGta < 2:5699986‑M2/7‑1 (MQ=255) atcgaactttatctggttttctcgtttcactaaccgaaggagATGCGtat < 1:114000‑M2/8‑1 (MQ=255) atcgaactttatctggttttctcgtttcactaaccgaaggagATGCGtat < 2:440694‑M2/8‑1 (MQ=255) atcgaactttatctggttttctcgtttcactaaccgaaggagATGCGta > 1:110329‑M2/43‑49 (MQ=255) atcgaactttatctggttttctcgtttcactaaccgaaggagATGCGta > 1:2637456‑M2/43‑49 (MQ=255) tcgaactttatctggttttctcgtttcactaaccgaaggagTTGCGtat > 1:104780‑M2/42‑49 (MQ=255) tcgaactttatctggttttctcgtttcactaaccgaaggagATGCGtata < 2:1120456‑M2/9‑1 (MQ=255) tcgaactttatctggttttctcgtttcactaaccgaaggagATGCGtat > 2:1182080‑M2/42‑49 (MQ=255) cgaactttatctggttttctcgtttcactaaccgaaggagATGCGtata > 2:1367661‑M2/41‑49 (MQ=255) gaactttatctggttttctcgtttcactaaccgaaggagATGCGtata > 1:4695306‑M2/40‑48 (MQ=255) gaactttatctggttttctcgtttcactaaccgaaggagATGCGtata > 1:3998122‑M2/40‑48 (MQ=255) gaactttatctggttttctcgtttcactaaccgaaggagATGCGtata > 2:3005658‑M2/40‑48 (MQ=255) gaactttatctggttttctcgtttcactaaccgaaggagATGCGTATaaa < 1:891751‑M2/11‑1 (MQ=255) aactttatctggttttctcgtttcactaaccgaaggagATGCGTATAAAg > 2:4257481‑M2/39‑50 (MQ=255) aactttatctggttttctcgtttcactaaccgaaggagATGCGTATAAAg < 1:4775421‑M2/12‑1 (MQ=255) aactttatctggttttctcgtttcactaaccgaaggagATGCGTATAAAg > 1:5451346‑M2/39‑50 (MQ=255) aactttatctggttttctcgtttcactaaccgaaggagATGCGTATAAAg < 2:5636319‑M2/12‑1 (MQ=255) aactttatctggttttctcgtttcactaaccgaaggagATGCGTATAAAg > 2:5060793‑M2/39‑50 (MQ=255) actttatctggttttctcgtttcactaaccgaaggagATGCGTATAAAGc > 1:1627680‑M2/38‑50 (MQ=255) ctttatctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCt < 2:3856543‑M2/14‑1 (MQ=255) tttatctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCtt > 2:1278080‑M2/36‑50 (MQ=255) tttatctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCtt > 1:1366847‑M2/36‑50 (MQ=255) tttatctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCtt > 2:5558409‑M2/36‑50 (MQ=255) ttatctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTc > 1:1231193‑M2/35‑50 (MQ=255) tatctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCtt < 2:3508002‑M2/15‑1 (MQ=255) tatctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCtt < 1:641274‑M2/15‑1 (MQ=255) tatctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCtt < 1:2811630‑M2/15‑1 (MQ=255) atctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTcc < 1:1085409‑M2/17‑1 (MQ=255) tctggttttctcgtttcactaaccgaaggagATGCGTATAAGGCTTCCg < 1:278872‑M2/18‑1 (MQ=255) tctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCg < 1:3262915‑M2/18‑1 (MQ=255) tctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCg < 1:5285165‑M2/18‑1 (MQ=255) tctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGa > 1:3884670‑M2/32‑50 (MQ=255) ctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGAt > 1:3615089‑M2/31‑50 (MQ=255) tggttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGAt > 2:2931524‑M2/30‑49 (MQ=255) gttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGa < 1:494937‑M2/19‑1 (MQ=255) gttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGAt < 2:2832681‑M2/20‑1 (MQ=255) gttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATg < 2:3377878‑M2/21‑1 (MQ=255) gttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGa < 1:4443832‑M2/22‑1 (MQ=255) gttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGa < 1:3298236‑M2/22‑1 (MQ=255) ttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGc > 2:4863609‑M2/27‑50 (MQ=255) ttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGc < 2:3518819‑M2/24‑1 (MQ=255) ttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGt > 1:318748‑M2/25‑50 (MQ=255) tctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGtt > 1:4257824‑M2/24‑50 (MQ=255) ctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGtt < 1:2168026‑M2/27‑1 (MQ=255) ctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGtt < 2:5264077‑M2/27‑1 (MQ=255) tcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTta > 1:4284884‑M2/22‑50 (MQ=255) cgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTta > 1:2090081‑M2/21‑49 (MQ=255) cgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTta > 2:3283299‑M2/21‑49 (MQ=255) gtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGttt < 2:2947118‑M2/28‑1 (MQ=255) gtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGttt < 2:3627302‑M2/28‑1 (MQ=255) gtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGttt < 1:5185737‑M2/28‑1 (MQ=255) gtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTtata < 2:704152‑M2/31‑1 (MQ=255) gtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTtat < 2:1163229‑M2/30‑1 (MQ=255) tttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTatat < 1:4572215‑M2/32‑1 (MQ=255) tttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTatat > 2:630012‑M2/19‑50 (MQ=255) ttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATg > 2:1217217‑M2/18‑50 (MQ=255) ttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATg > 1:1699883‑M2/18‑50 (MQ=255) tcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATg < 2:536061‑M2/33‑1 (MQ=255) tcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATg < 1:3691199‑M2/33‑1 (MQ=255) tcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGt > 1:2575661‑M2/17‑50 (MQ=255) tcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGt > 2:3763716‑M2/17‑50 (MQ=255) cactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGt > 2:4645396‑M2/16‑49 (MQ=255) cactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGt > 1:4815265‑M2/16‑49 (MQ=255) actaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTc < 1:4031000‑M2/35‑1 (MQ=255) taaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCaa > 1:3046133‑M2/13‑49 (MQ=255) taaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCaa > 2:5428352‑M2/13‑49 (MQ=255) aaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAAt > 2:2598801‑M2/12‑49 (MQ=255) accgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAAt < 1:3777651‑M2/38‑1 (MQ=255) accgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATaa < 2:2656662‑M2/40‑1 (MQ=255) accgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATaa < 2:2112297‑M2/40‑1 (MQ=255) accgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATaa < 1:3191972‑M2/40‑1 (MQ=255) accgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATaa < 2:1492733‑M2/40‑1 (MQ=255) accgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATa < 2:796624‑M2/39‑1 (MQ=255) accgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATa < 2:2870924‑M2/39‑1 (MQ=255) ccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAg > 2:2254419‑M2/10‑50 (MQ=255) ccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAg < 1:5674093‑M2/41‑1 (MQ=255) cgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAg > 1:5064783‑M2/9‑49 (MQ=255) cgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAg > 1:4125928‑M2/9‑49 (MQ=255) gaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAg > 2:1029444‑M2/8‑48 (MQ=255) aaggagATGCGTATAACGCTTCCGATGAGCGTTTATATGTCAATAAg > 2:3694092‑M2/7‑47 (MQ=255) aaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAg > 1:1864008‑M2/7‑47 (MQ=255) aaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAg < 1:461116‑M2/44‑1 (MQ=255) aggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAg > 2:2955289‑M2/6‑49 (MQ=255) aggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAg > 2:2336179‑M2/6‑49 (MQ=255) aggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAg > 1:2046568‑M2/6‑49 (MQ=255) ggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGaa < 2:1378096‑M2/46‑1 (MQ=255) ggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGaa < 2:5591132‑M2/46‑1 (MQ=255) ggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGaa > 1:2927041‑M2/5‑50 (MQ=255) ggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGaa > 2:1573986‑M2/5‑50 (MQ=255) agATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACa < 1:2958571‑M2/48‑1 (MQ=255) | GGCTTCTCTTCCGGTATTTACGCGATGAAAGAAAACGATACGTTACATGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACAA > NC_000913/1873418‑1873515 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |