| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,558,699 | Δ6,790 bp | intZ–[eutA] | intZ, yffL, yffM, yffN, yffO, yffP, yffQ, yffR, yffS, [eutA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2558699 | 2565488 | 6790 | 133 [0] | [0] 132 | intZ–[eutA] | intZ,yffL,yffM,yffN,yffO,yffP,yffQ,yffR,yffS,[eutA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2558698 | 0 (0.000) | 110 (0.870) | 59/82 | 0.0 | 100% | intergenic (‑19/‑160) | eutB/intZ | ethanolamine ammonia‑lyase subunit alpha/CPZ‑55 prophage; putative phage integrase IntZ |
| ? | NC_000913 | 2565489 = | 0 (0.000) | coding (1396/1404 nt) | eutA | reactivating factor for ethanolamine ammonia‑lyase EutBC | |||||
Only 100 of 132 total aligned reads displayed.
AGCACCCAGCCACCCAGCGCCACCGCTGGCGAATACCGCATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGA > NC_000913/2565440‑2565538 | attgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagg < 1:4427018‑M2/1‑1 (MQ=255) ttgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagga < 1:4150534‑M2/2‑1 (MQ=255) ttgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagg > 2:4529864‑M2/49‑49 (MQ=255) gccgaacaatgtggtctttagtttcataagtcgttccctcaggaaggaa < 1:3308333‑M2/3‑1 (MQ=255) ccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGaaa < 2:468079‑M2/4‑1 (MQ=255) ccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAAt < 1:4847482‑M2/5‑1 (MQ=255) ccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAAt < 2:5427742‑M2/5‑1 (MQ=255) ccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAAt > 1:4016547‑M2/46‑50 (MQ=255) cgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATg > 1:516228‑M2/45‑50 (MQ=255) cgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATg < 1:4625289‑M2/6‑1 (MQ=255) cgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATg > 2:3793888‑M2/45‑50 (MQ=255) gaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGc > 1:5551479‑M2/44‑50 (MQ=255) gaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGc > 2:2298010‑M2/44‑50 (MQ=255) gaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGc < 2:2790123‑M2/7‑1 (MQ=255) gaacaatgtggtctttaatttcataagtcgttccctcaggaagGAAATGc > 1:2112365‑M2/44‑50 (MQ=255) aacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGc > 2:771556‑M2/43‑49 (MQ=255) aacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCg < 2:4270094‑M2/8‑1 (MQ=255) aacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCg < 2:5590737‑M2/8‑1 (MQ=255) acaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGc > 2:4435852‑M2/42‑48 (MQ=255) acaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGc > 1:5562190‑M2/42‑48 (MQ=255) gtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGAt > 1:388959‑M2/37‑50 (MQ=255) gtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGAttt > 1:78225‑M2/34‑49 (MQ=255) gtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGAttt < 2:1891507‑M2/16‑1 (MQ=255) gtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGAttt < 2:5656763‑M2/16‑1 (MQ=255) gtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGAttt < 2:1886352‑M2/16‑1 (MQ=255) gtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGAttt > 2:1561943‑M2/34‑49 (MQ=255) gtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtc < 2:3823483‑M2/17‑1 (MQ=255) gtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtc < 1:5353976‑M2/17‑1 (MQ=255) tctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtca > 1:2661386‑M2/33‑50 (MQ=255) tctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtca > 2:4249173‑M2/33‑50 (MQ=255) ctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcac > 1:1066724‑M2/32‑50 (MQ=255) ctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcac > 2:1710301‑M2/32‑50 (MQ=255) tttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcacc > 1:3040468‑M2/31‑50 (MQ=255) tttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcacc > 2:5105556‑M2/31‑50 (MQ=255) tttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcacc > 2:4728596‑M2/31‑50 (MQ=255) tagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcac < 2:757362‑M2/19‑1 (MQ=255) tagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcac < 2:3040780‑M2/19‑1 (MQ=255) agtttcataggtcgttccctcaggaagGAAATGCGAGTGATTtcaccgt > 2:1450682‑M2/28‑49 (MQ=255) agtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgt < 1:4752581‑M2/22‑1 (MQ=255) agtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgt > 2:5072222‑M2/28‑49 (MQ=255) agtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgt > 2:4126000‑M2/28‑49 (MQ=255) gtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtc < 1:1143908‑M2/23‑1 (MQ=255) gtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtc < 1:3529374‑M2/23‑1 (MQ=255) gtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtc < 1:4830507‑M2/23‑1 (MQ=255) tttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtcac < 1:3313526‑M2/25‑1 (MQ=255) tttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtcac < 1:3883320‑M2/25‑1 (MQ=255) ttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtcacc > 1:2520315‑M2/25‑50 (MQ=255) tcatacgtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtcaccg > 2:4895621‑M2/24‑50 (MQ=255) tcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtcaccg > 1:4076484‑M2/24‑50 (MQ=255) tcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtcacc < 1:1847738‑M2/26‑1 (MQ=255) tcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtcacc < 2:190589‑M2/26‑1 (MQ=255) cataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtcaccg < 2:1128898‑M2/27‑1 (MQ=255) cataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtcaccg < 1:4820601‑M2/27‑1 (MQ=255) cataagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCgg > 2:1348355‑M2/23‑50 (MQ=255) cataagtcgtaccctcaggcagGAAATGCGAGTGATTTCACCGTCAACgg > 1:3811537‑M2/23‑50 (MQ=255) ataagtcgttccctcaggaagGAAATTCGAGTGATTTCACCGTCACCgg > 2:2607433‑M2/22‑49 (MQ=255) ataagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGc < 2:2238112‑M2/29‑1 (MQ=255) agtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGcaca < 2:5653991‑M2/32‑1 (MQ=255) agtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGcac > 2:3001855‑M2/19‑49 (MQ=255) agtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGcac > 2:745420‑M2/19‑49 (MQ=255) gtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACaa > 2:2555259‑M2/18‑50 (MQ=255) gtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACaa > 2:5329522‑M2/18‑50 (MQ=255) tcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAAc > 1:2494902‑M2/17‑50 (MQ=255) tcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAAc < 1:5819228‑M2/34‑1 (MQ=255) cgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAAcc > 1:430005‑M2/16‑50 (MQ=255) gttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGTACAAcc < 1:1333505‑M2/35‑1 (MQ=255) gttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAAcc < 2:180568‑M2/35‑1 (MQ=255) gttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAAcc < 2:1687138‑M2/35‑1 (MQ=255) gttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCg < 2:5047482‑M2/36‑1 (MQ=255) ttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGa < 2:1962085‑M2/37‑1 (MQ=255) ttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGa < 1:3228597‑M2/37‑1 (MQ=255) tccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGAt > 1:1824386‑M2/13‑50 (MQ=255) ccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGAt < 1:4374706‑M2/38‑1 (MQ=255) ccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGAt < 1:5356841‑M2/38‑1 (MQ=255) ccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATc > 2:215139‑M2/12‑50 (MQ=255) cctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATcc < 1:2868893‑M2/40‑1 (MQ=255) cctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATcc < 1:5314560‑M2/40‑1 (MQ=255) cctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATcc > 2:1086261‑M2/11‑50 (MQ=255) cctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATcc < 2:3722631‑M2/40‑1 (MQ=255) cctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATcc > 2:2307050‑M2/11‑50 (MQ=255) cctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATcc < 2:1974011‑M2/40‑1 (MQ=255) cctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATc < 2:1358607‑M2/39‑1 (MQ=255) cctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATc < 1:5576218‑M2/39‑1 (MQ=255) ctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCg < 1:2939991‑M2/41‑1 (MQ=255) tcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGc > 2:5678746‑M2/9‑50 (MQ=255) caggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGc > 1:2748324‑M2/8‑49 (MQ=255) aggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGcc < 1:383024‑M2/43‑1 (MQ=255) aggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGcc > 1:4872420‑M2/7‑49 (MQ=255) aggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGcc < 2:3381776‑M2/43‑1 (MQ=255) aggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGc < 1:5671168‑M2/42‑1 (MQ=255) aggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCa < 1:443600‑M2/44‑1 (MQ=255) gaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaa < 2:320074‑M2/46‑1 (MQ=255) gaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaa > 1:2519206‑M2/5‑49 (MQ=255) aagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaaa < 2:3405107‑M2/47‑1 (MQ=255) agGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaaaa < 1:2945260‑M2/48‑1 (MQ=255) agGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaa > 2:4777774‑M2/3‑48 (MQ=255) gGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaa > 2:1128068‑M2/2‑47 (MQ=255) gaaATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaaaa > 2:4279771/1‑48 (MQ=255) gaaATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAaga < 2:3928427/50‑1 (MQ=255) gaaATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAaga < 1:1244422/50‑1 (MQ=255) | AGCACCCAGCCACCCAGCGCCACCGCTGGCGAATACCGCATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGA > NC_000913/2565440‑2565538 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |