BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,299,499	Δ1,199 bp		insH21	insH21

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1299499	1300697	1199	112 [0]	[0] 113	insH21	insH21

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1299498	0 (0.000)	106 (0.760)	61/90	0.0	100%	intergenic (+253/‑33)	ychE/insH21	putative inner membrane protein/IS5 transposase and trans‑activator
*	?	NC_000913	1300698 =	0 (0.000)	106 (0.760)	61/90	0.0	100%	intergenic (+151/‑484)	insH21/oppA	IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein

Only 100 of 112 total aligned reads displayed.

ATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAG  >  NC_000913/1299449‑1299547

atTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAA                                                   <  1:4753355‑M1/50‑1 (MQ=255)

atTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAA                                                   <  1:5397060‑M1/50‑1 (MQ=255)

 ttGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAa                                                  >  1:449174‑M1/1‑49 (MQ=255)

 ttGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAa                                                  >  2:5691464‑M1/1‑49 (MQ=255)

 ttGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAa                                                  <  2:1269055‑M1/50‑2 (MQ=255)

 ttGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAa                                                  >  2:2955183‑M1/1‑49 (MQ=255)

  tGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAa                                                  >  1:412090‑M1/1‑48 (MQ=255)

   gAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAat                                                 <  2:21027‑M1/49‑3 (MQ=255)

   gAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAat                                                 >  2:4757716‑M1/1‑47 (MQ=255)

   gAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAat                                                 <  1:2766484‑M1/49‑3 (MQ=255)

   gAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAat                                                 >  2:3080196‑M1/1‑47 (MQ=255)

   gAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAat                                                 >  2:5504618‑M1/1‑47 (MQ=255)

   gAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAat                                                 >  2:2489135‑M1/1‑47 (MQ=255)

    aaaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataa                                               <  1:2444905‑M1/50‑5 (MQ=255)

    aaaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataa                                               <  1:4004655‑M1/50‑5 (MQ=255)

    aaaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAata                                                <  2:1088247‑M1/49‑4 (MQ=255)

    aaaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAata                                                <  2:4861037‑M1/49‑4 (MQ=255)

     aaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataat                                              <  1:1282887‑M1/50‑6 (MQ=255)

     aaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataa                                               >  2:1818195‑M1/1‑45 (MQ=255)

     aaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataa                                               >  2:4643896‑M1/1‑45 (MQ=255)

      aTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataata                                             <  1:1818802‑M1/50‑7 (MQ=255)

      aTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataata                                             <  1:1668764‑M1/50‑7 (MQ=255)

      aTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataat                                              >  1:4138366‑M1/1‑44 (MQ=255)

       tGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataa                                            >  1:450256‑M1/1‑43 (MQ=255)

        gATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataat                                           >  2:5310384‑M1/1‑42 (MQ=255)

         ttattattAATTCCACTGCCTATGGTAGAGGAAAGTGCTAAataataat                                           >  2:845927‑M1/2‑41 (MQ=255)

         atatTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatc                                          <  1:2852234‑M1/50‑10 (MQ=255)

         atatTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataat                                           >  2:2872295‑M1/1‑41 (MQ=255)

         atatTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataat                                           >  1:2192849‑M1/1‑41 (MQ=255)

          tattatTAATTCCACTGCCTTTGGTAGAGGAAGGTGCTAAataataatc                                          >  1:1517552‑M1/1‑40 (MQ=255)

          tattatTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatca                                         <  2:111543‑M1/50‑11 (MQ=255)

           attattAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaa                                        >  1:853737‑M1/1‑39 (MQ=255)

             tattaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaatt                                      >  1:3907232‑M1/1‑37 (MQ=255)

             tattaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaatt                                      >  2:2298096‑M1/1‑37 (MQ=255)

              attaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattg                                     >  2:4547548‑M1/1‑36 (MQ=255)

               ttaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgt                                    <  2:5053022‑M1/50‑16 (MQ=255)

               ttaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattg                                     <  2:4114055‑M1/49‑15 (MQ=255)

               ttaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattg                                     <  2:3229575‑M1/49‑15 (MQ=255)

                taATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgt                                    >  1:3824691‑M1/1‑34 (MQ=255)

                taATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgt                                    >  1:1119818‑M1/1‑34 (MQ=255)

                 aaTTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgtt                                   <  2:5043070‑M1/49‑17 (MQ=255)

                 aaTTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgtt                                   <  2:624304‑M1/49‑17 (MQ=255)

                   ttCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaa                                >  1:5012621‑M1/1‑31 (MQ=255)

                   ttCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaa                                >  1:3510763‑M1/1‑31 (MQ=255)

                     ccACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaat                               >  2:418803‑M1/1‑29 (MQ=255)

                     ccACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaat                               <  1:788366‑M1/49‑21 (MQ=255)

                      cACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaatta                             >  1:2206566‑M1/1‑28 (MQ=255)

                      cACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaatta                             <  1:1572173‑M1/50‑23 (MQ=255)

                      cACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaatta                             <  1:5826726‑M1/50‑23 (MQ=255)

                      cACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaatta                             <  1:598269‑M1/50‑23 (MQ=255)

                      cACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaatt                              <  2:4403280‑M1/49‑22 (MQ=255)

                       aCTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattat                            <  1:92306‑M1/50‑24 (MQ=255)

                       aCTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattat                            <  2:4743776‑M1/50‑24 (MQ=255)

                       aCTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattat                            <  1:4047400‑M1/50‑24 (MQ=255)

                        cTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattatt                           <  1:2091805‑M1/50‑25 (MQ=255)

                        cTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattatt                           <  2:3776124‑M1/50‑25 (MQ=255)

                         tGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattg                          >  1:3123127‑M1/1‑25 (MQ=255)

                           ccTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtg                        <  2:2930367‑M1/50‑28 (MQ=255)

                           ccTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtg                        >  1:897319‑M1/1‑23 (MQ=255)

                           ccTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtg                        <  2:2823585‑M1/50‑28 (MQ=255)

                           ccTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtg                        <  1:5565178‑M1/50‑28 (MQ=255)

                           ccTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtg                        <  2:298372‑M1/50‑28 (MQ=255)

                           ccTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattg                          <  2:888656‑M1/48‑26 (MQ=255)

                            cTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgc                       <  1:1044254‑M1/50‑29 (MQ=255)

                            cTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtg                        >  1:2908840‑M1/1‑22 (MQ=255)

                             tttGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgca                      >  1:3661080‑M1/1‑21 (MQ=255)

                               tGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcat                     <  1:1104086‑M1/49‑31 (MQ=255)

                               tGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgca                      <  2:2489399‑M1/48‑30 (MQ=255)

                               tGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgca                      <  2:2981231‑M1/48‑30 (MQ=255)

                                 gTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttc                  <  1:3373260‑M1/50‑34 (MQ=255)

                                 gTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttc                  <  1:2763569‑M1/50‑34 (MQ=255)

                                 gTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttc                  <  1:974372‑M1/50‑34 (MQ=255)

                                 gTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttc                  <  1:5529849‑M1/50‑34 (MQ=255)

                                 gTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcattt                   <  2:1764457‑M1/49‑33 (MQ=255)

                                 gTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcattt                   <  1:2349357‑M1/49‑33 (MQ=255)

                                  tAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttca                 >  2:4775280‑M1/1‑16 (MQ=255)

                                  tAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttca                 >  1:3356244‑M1/1‑16 (MQ=255)

                                  tAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttca                 <  1:373328‑M1/50‑35 (MQ=255)

                                   agagGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcac                >  1:5764279‑M1/1‑15 (MQ=255)

                                    gagGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcac                >  2:4669832‑M1/1‑14 (MQ=255)

                                     agGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcacta              >  1:2486844‑M1/1‑13 (MQ=255)

                                       gAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactact            <  2:5558308‑M1/50‑40 (MQ=255)

                                        aaaGTGCTAAataataatcaattgttaaattattgtgcatttcactactg           <  2:4416788‑M1/50‑41 (MQ=255)

                                        aaaGTGCTAAataataatcaattgttaaattattgtgcatttcactactg           >  2:4652493‑M1/1‑10 (MQ=255)

                                         aaGTGCTAAataataatcaattgttaaattattgtgcatttcactactgg          <  1:3839022‑M1/50‑42 (MQ=255)

                                         aaGTGCTAAataataatcaattgttaaattattgtgcatttcactactg           >  1:847958‑M1/1‑9 (MQ=255)

                                         aaGTGCTAAataataatcaattgttaaattattgtgcatttcactactg           >  1:4637028‑M1/1‑9 (MQ=255)

                                          aGTGCTAAataataatcaattgttaaattattgtgcatttcactactgga         <  1:3157756‑M1/50‑43 (MQ=255)

                                          aGTGCTAAataataatcaattgttaaattattgtgcatttcactactgga         <  2:355885‑M1/50‑43 (MQ=255)

                                           gTGCTAAataataatcaattgttaaattattgtgcatttcactactggaa        <  2:5808310‑M1/50‑44 (MQ=255)

                                           gTGCTAAataataatcaattgttaaattattgtgcatttcactactggaa        <  1:4262466‑M1/50‑44 (MQ=255)

                                            tGCTAAataataatcaattgttaaattattgtgcatttcactactggaac       >  2:486662‑M1/1‑6 (MQ=255)

                                            tGCTAAataataatcaattgttaaattattgtgcatttcactactggaac       >  1:5412888‑M1/1‑6 (MQ=255)

                                            tGCTAAataataatcaattgttaaattattgtgcatttcactactggaac       >  1:1479291‑M1/1‑6 (MQ=255)

                                            tGCTAAataataatcaattgttaaattattgtgcatttcactactggaac       >  1:1188982‑M1/1‑6 (MQ=255)

                                            tGCTAAataataatcaattgttaaattattgtgcatttcactactggaac       >  2:685983‑M1/1‑6 (MQ=255)

                                             gCTAAataataatcaattgttaaattattgtgcatttcactactggaact      >  1:5732464‑M1/1‑5 (MQ=255)

                                                 aataataatcaattgttaaattattgtgcatttcactactggaactgtaa  >  1:1037596‑M1/1‑1 (MQ=255)

                                                 aataataatcaattgttaaattattgtgcatttcactactggaactgta   <  1:4070258‑M1/49‑49 (MQ=255)

                                                 aataataatcaattgttaaattattgtgcatttcactactggaactgt    <  2:4621194‑M1/48‑48 (MQ=255)

ATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAG  >  NC_000913/1299449‑1299547

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`