| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,509,562 | Δ46,201 bp | [hicB]–maeA | 43 genes [hicB], ydcR, ydcS, ydcT, ydcU, ydcV, patD, yncL, ortT, ydcY, ydcZ, mnaT, curA, mcbR, yncD, yncE, ansP, yncG, yncH, rhsE, ydcD, yncO, yncI, ydcC, pptA, yddH, nhoA, yddE, narV, narW, narY, narZ, narU, yddJ, yddK, yddL, yddG, fdnG, fdnH, fdnI, yddM, adhP, maeA |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1509562 | 1555762 | 46201 | 221 [0] | [0] 221 | [hicB]–maeA | [hicB],ydcR,ydcS,ydcT,ydcU,ydcV,patD,yncL,ortT,ydcY,ydcZ,mnaT,curA,mcbR,yncD,yncE,ansP,yncG,yncH,rhsE,ydcD,yncO,yncI,ydcC,pptA,yddH,nhoA,yddE,narV,narW,narY,narZ,narU,yddJ,yddK,yddL,yddG,fdnG,fdnH,fdnI,yddM,adhP,maeA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1509561 | 0 (0.000) | 218 (1.440) | 79/98 | 0.0 | 100% | coding (54/417 nt) | hicB | antitoxin of the HicA‑HicB toxin‑antitoxin system |
| ? | NC_000913 | 1555763 = | 0 (0.000) | intergenic (‑94/+63) | maeA/sra | malate dehydrogenase, NAD‑requiring/30S ribosomal subunit protein S22 | |||||
Only 100 of 221 total aligned reads displayed.
GTTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGACCCAGGGCGAAACTGTCGCTGAAG > NC_000913/1509512‑1509610 | gTTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCt < 1:3481248/50‑1 (MQ=255)gTTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCt < 1:3894504/50‑1 (MQ=255) ttATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTa < 2:1392125‑M1/50‑2 (MQ=255) tATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTa > 2:1039016‑M1/1‑48 (MQ=255) aTCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaa > 1:3573235‑M1/1‑47 (MQ=255) aTCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaa > 2:5426170‑M1/1‑47 (MQ=255) aTCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaa < 2:864543‑M1/49‑3 (MQ=255) aTCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaa < 2:3184188‑M1/49‑3 (MQ=255) tCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaa > 2:4986842‑M1/1‑46 (MQ=255) tCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaa > 2:2768164‑M1/1‑46 (MQ=255) tCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaa < 1:3273407‑M1/49‑4 (MQ=255) cccGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaac > 1:13458‑M1/1‑45 (MQ=255) cccGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaac > 1:3318304‑M1/1‑45 (MQ=255) ccGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaaca < 1:1595452‑M1/49‑6 (MQ=255) ccGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaaca > 1:2709906‑M1/1‑44 (MQ=255) cGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaa < 2:3057992‑M1/50‑8 (MQ=255) cGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaa < 2:5556356‑M1/50‑8 (MQ=255) gTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaa < 2:5486543‑M1/50‑9 (MQ=255) gTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaa < 1:3074892‑M1/50‑9 (MQ=255) tCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaa > 2:2967420‑M1/1‑41 (MQ=255) tCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaa < 1:4168909‑M1/50‑10 (MQ=255) tCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaa < 1:1856797‑M1/50‑10 (MQ=255) aCTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaaca < 1:5545581‑M1/50‑12 (MQ=255) tctTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacac > 2:3099659‑M1/1‑37 (MQ=255) ttACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccat > 2:1126222‑M1/1‑35 (MQ=255) ttACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccat > 2:3560016‑M1/1‑35 (MQ=255) ttACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacacc < 1:3433734‑M1/48‑14 (MQ=255) tACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccatt > 1:2253254‑M1/1‑34 (MQ=255) acacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattg > 2:3605687‑M1/1‑33 (MQ=255) acacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattg > 1:1218224‑M1/1‑33 (MQ=255) acacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccatt < 1:1321911‑M1/49‑17 (MQ=255) acacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccatt < 2:5087849‑M1/49‑17 (MQ=255) acacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccatt < 1:3955220‑M1/49‑17 (MQ=255) acacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccatt < 2:3692539‑M1/49‑17 (MQ=255) cacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgc < 2:2109098‑M1/50‑19 (MQ=255) cacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgc < 2:4703694‑M1/50‑19 (MQ=255) cacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgc > 1:2101149‑M1/1‑32 (MQ=255) acCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcg > 2:4442092‑M1/1‑31 (MQ=255) acCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcg > 1:4980331‑M1/1‑31 (MQ=255) cccGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacgccattgcgc < 1:618725‑M1/50‑21 (MQ=255) cccGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgc < 1:2548933‑M1/50‑21 (MQ=255) cccGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgc < 2:2679452‑M1/50‑21 (MQ=255) cccGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcg > 1:2264001‑M1/1‑30 (MQ=255) ccGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgca < 1:4464982‑M1/50‑22 (MQ=255) cgcgCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcag < 2:4747205‑M1/50‑23 (MQ=255) cgcCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggc < 1:4716284‑M1/50‑25 (MQ=255) gcCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggc > 1:1537986‑M1/1‑25 (MQ=255) ccGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaa > 1:768241‑M1/1‑24 (MQ=255) ccGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaa > 1:134725‑M1/1‑24 (MQ=255) cGGAAGGCGGTTATATGGTTTCTaaacaaaaacgccattgcgcaggcaat < 2:1614544‑M1/50‑28 (MQ=255) cGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaat > 1:560363‑M1/1‑23 (MQ=255) cGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaat < 1:5154562‑M1/50‑28 (MQ=255) cGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaat > 2:2930484‑M1/1‑23 (MQ=255) cGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaat > 2:5841226‑M1/1‑23 (MQ=255) cGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaat < 1:2950297‑M1/50‑28 (MQ=255) cGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaat < 2:4140398‑M1/50‑28 (MQ=255) ggAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatg > 1:4375464‑M1/1‑22 (MQ=255) ggAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatg > 1:1921729‑M1/1‑22 (MQ=255) ggAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatg > 2:4083462‑M1/1‑22 (MQ=255) aaGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggg > 1:5019051‑M1/1‑20 (MQ=255) aaGGCGGTTATATGGCTTCTaaacaaaaacaccattgcgcaggcaatggt > 2:1480703‑M1/1‑20 (MQ=255) aGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtg < 2:5738795‑M1/50‑32 (MQ=255) aGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtg > 1:243279‑M1/1‑19 (MQ=255) gCGGTTATATGGTTTCTaaacaaaaacaccattgcgcatgcaatggtgtt > 1:2070952‑M1/1‑17 (MQ=255) cGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgttt < 2:3578360‑M1/50‑35 (MQ=255) cGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgttt < 1:5238380‑M1/50‑35 (MQ=255) cGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtt > 1:2000643‑M1/1‑16 (MQ=255) cGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtt > 2:4823066‑M1/1‑16 (MQ=255) ggTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgttta < 2:1825180‑M1/50‑36 (MQ=255) ggTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgttt > 2:330043‑M1/1‑15 (MQ=255) ggTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgttt > 2:2437888‑M1/1‑15 (MQ=255) ggTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgttt > 1:4930389‑M1/1‑15 (MQ=255) ttATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaat > 2:2032231‑M1/1‑13 (MQ=255) ttATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaat < 1:5742354‑M1/50‑38 (MQ=255) tataTGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatc > 2:2174917‑M1/1‑12 (MQ=255) tataTGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatc > 1:2787869‑M1/1‑12 (MQ=255) atatGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcg > 2:1259475‑M1/1‑11 (MQ=255) atatGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatc < 1:4304792‑M1/49‑39 (MQ=255) tatGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgt > 1:5834065‑M1/1‑10 (MQ=255) tatGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgt > 2:1372485‑M1/1‑10 (MQ=255) tatGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgt < 2:3518441‑M1/50‑41 (MQ=255) atGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgt > 2:5753802‑M1/1‑9 (MQ=255) atGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgt > 2:3896754‑M1/1‑9 (MQ=255) atGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgt > 2:2942623‑M1/1‑9 (MQ=255) tGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtca < 2:1893186‑M1/50‑43 (MQ=255) tGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtca > 1:2744308‑M1/1‑8 (MQ=255) ggTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcat > 2:1960032‑M1/1‑7 (MQ=255) gTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcatt < 1:1892877‑M1/50‑45 (MQ=255) gTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcatt > 2:1439409‑M1/1‑6 (MQ=255) gTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcatt < 1:66288‑M1/50‑45 (MQ=255) gTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcat < 2:3036158‑M1/49‑44 (MQ=255) tttCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcattg < 1:2313026‑M1/50‑46 (MQ=255) tttCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcatt > 1:1755051‑M1/1‑5 (MQ=255) tCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcattga < 1:1774965‑M1/49‑47 (MQ=255) cTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcattgag < 2:2219297‑M1/49‑48 (MQ=255) cTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcattgag < 1:1145677‑M1/49‑48 (MQ=255) cTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcattgag < 2:3753348‑M1/49‑48 (MQ=255) cTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcattgag > 1:23812‑M1/1‑2 (MQ=255) cTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcattgag > 1:2854452‑M1/1‑2 (MQ=255) taaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcattgagga > 2:4316324‑M1/1‑1 (MQ=255) | GTTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGACCCAGGGCGAAACTGTCGCTGAAG > NC_000913/1509512‑1509610 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |