| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,509,562 | Δ46,201 bp | [hicB]–maeA | 43 genes [hicB], ydcR, ydcS, ydcT, ydcU, ydcV, patD, yncL, ortT, ydcY, ydcZ, mnaT, curA, mcbR, yncD, yncE, ansP, yncG, yncH, rhsE, ydcD, yncO, yncI, ydcC, pptA, yddH, nhoA, yddE, narV, narW, narY, narZ, narU, yddJ, yddK, yddL, yddG, fdnG, fdnH, fdnI, yddM, adhP, maeA |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1509562 | 1555762 | 46201 | 221 [0] | [0] 221 | [hicB]–maeA | [hicB],ydcR,ydcS,ydcT,ydcU,ydcV,patD,yncL,ortT,ydcY,ydcZ,mnaT,curA,mcbR,yncD,yncE,ansP,yncG,yncH,rhsE,ydcD,yncO,yncI,ydcC,pptA,yddH,nhoA,yddE,narV,narW,narY,narZ,narU,yddJ,yddK,yddL,yddG,fdnG,fdnH,fdnI,yddM,adhP,maeA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1509561 | 0 (0.000) | 218 (1.440) | 79/98 | 0.0 | 100% | coding (54/417 nt) | hicB | antitoxin of the HicA‑HicB toxin‑antitoxin system |
| ? | NC_000913 | 1555763 = | 0 (0.000) | intergenic (‑94/+63) | maeA/sra | malate dehydrogenase, NAD‑requiring/30S ribosomal subunit protein S22 | |||||
Only 100 of 221 total aligned reads displayed.
GTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAGGAC > NC_000913/1555715‑1555812 | tatcccgtcactcttacacccgcgccggaaggcggttatatggtttcta > 2:1039016‑M2/49‑49 (MQ=255) atcccgtcactcttacacccgcgccggaaggcggttatatggtttctaaa > 2:3333120‑M2/48‑50 (MQ=255) atcccgtcactcttacacccgcgccggaaggcggttatatggtttctaaa > 2:5426170‑M2/48‑50 (MQ=255) atcccgtcactcttacacccgcgccggaaggcggttatatggtttctaaa > 1:3573235‑M2/48‑50 (MQ=255) atcccgtcactcttacacccgcgccggaaggcggttatatggtttctaa < 2:864543‑M2/2‑1 (MQ=255) atcccgtcactcttacacccgcgccggaaggcggttatatggtttctaa < 2:2467991‑M2/2‑1 (MQ=255) atcccgtcactcttacacccgcgccggaaggcggttatatggtttctaa < 1:3292065‑M2/2‑1 (MQ=255) atcccgtcactcttacacccgcgccgaaaggcggttatatggtttctaa < 1:3441668‑M2/2‑1 (MQ=255) tcccgtcactcttacacccgcgccggaaggcggttatatggtttctaaa > 2:4986842‑M2/47‑49 (MQ=255) cccgtcactcttacacccgcgccggaaggcggttatatggtttctAAAc > 2:1290320‑M2/46‑49 (MQ=255) cccgtcactcttacacccgcgccggaaggcggttatatggtttctAAAc > 2:3543203‑M2/46‑49 (MQ=255) cccgtcactcttacacccgcgccggaaggcggttatatggtttctAAAc > 1:13458‑M2/46‑49 (MQ=255) ccgtcactcttacacccgcgccggaaggcggttatatggtttctAAACa < 2:3861549‑M2/5‑1 (MQ=255) ccgtcactcttacacccgcgccggaaggcggttatatggtttctAAACa < 1:1595452‑M2/5‑1 (MQ=255) cgtcactcttacacccgcgccggaaggcggttatatggtttctAAACaaa < 1:3401659‑M2/7‑1 (MQ=255) cgtcactcttacacccgcgccggaaggcggttatatggtttctAAACaaa < 2:5556356‑M2/7‑1 (MQ=255) cgtcacgcttacacccgcgccggaaggcggttatatggtttctAAACaaa < 2:2116375‑M2/7‑1 (MQ=255) gtcactcttacacccgcgccggaaggcggttatatggtttctAAACaaaa < 2:5486543‑M2/8‑1 (MQ=255) gtcactcttacacccgcgccggaaggcggttatatggtttctAAACaaa > 2:1679530‑M2/43‑49 (MQ=255) gtcactcttacacccgcgccggaaggcggttatatggtttctAAACaaa > 1:2738078‑M2/43‑49 (MQ=255) tcactcttacacccgcgccggaaggcggttatatggtttctAAACaaaaa < 1:1856797‑M2/9‑1 (MQ=255) tcactcttacacccgcgccggaaggcggttatatggtttctAAACaaaaa < 1:4168909‑M2/9‑1 (MQ=255) actcttacacccgcgccggaaggcggttatatggtttctAAACAAAAaca < 1:5545581‑M2/11‑1 (MQ=255) tcttacacccgcgccggaaggcggttatatggtttctAAACAAAAacac > 1:2300926‑M2/38‑49 (MQ=255) tcttacacccgcgccggaaggcggttatatggtttctAAACAAAAacac > 1:2240099‑M2/38‑49 (MQ=255) cttacacccgcgccggaaggcggttatatggtttctAAACAAAAACACCa > 2:142311‑M2/37‑50 (MQ=255) ttacacccgcgccggaaggcggttatatggtttctAAACAAAAACACCAt > 2:1126222‑M2/36‑50 (MQ=255) ttacacccgcgccggaaggcggttatatggtttctAAACAAAAACACCAt > 2:3906906‑M2/36‑50 (MQ=255) acacccgcgccggaaggcggttatatggtttctAAACAAAAACACCAtt < 2:3096401‑M2/16‑1 (MQ=255) acacccgcgccggaaggcggttatatggtttctAAACAAAAACACCAtt < 2:5087849‑M2/16‑1 (MQ=255) acacccgcgccggaaggcggttatatggtttctAAACAAAAACACCAtt < 1:1321911‑M2/16‑1 (MQ=255) acacccgcgccggaaggcggttatatggtttctAAACAAAAACACCAtt < 1:3955220‑M2/16‑1 (MQ=255) acacccgcgccggaaggcggttatatggtttctAAACAAAAACACCAt < 1:200578‑M2/15‑1 (MQ=255) acacccgcgccggaaggcggttatatggtttctAAACAAAAACACCATTg > 1:1218224‑M2/34‑50 (MQ=255) acacccgcgccggaaggcggttatatggtttctAAACAAAAACACCATTg > 1:2077118‑M2/34‑50 (MQ=255) cacccgcgccggaaggcggttatatggtttctAAACAAAAACACCATTgc > 1:2822315‑M2/33‑50 (MQ=255) cacccgcgccggaaggcggttatatggtttctAAACAAAAACACCATTg < 1:2785727‑M2/17‑1 (MQ=255) acccgcgccggaaggcggttatatggtttctAAACAAAAACACCATTgcg > 1:4980331‑M2/32‑50 (MQ=255) acccgcgccggaaggcggttatatggtttctAAACAAAAACACCATTgcg < 1:3071494‑M2/19‑1 (MQ=255) cccgcgccggaaggcggttatatggtttctAAACAAAAACGCCATTgcgc < 1:618725‑M2/20‑1 (MQ=255) cccgcgccggaaggcggttatatggtttctAAACAAAAACACCATTgcgc < 1:2464513‑M2/20‑1 (MQ=255) cccgcgccggaaggcggttatatggtttctAAACAAAAACACCATTgcgc < 2:4738999‑M2/20‑1 (MQ=255) ccgcgccggaaggcggttatatggtttctAAACAAAAACACCATTgcg > 2:4779105‑M2/30‑48 (MQ=255) ccgcgccggaaggcggttatatggtttctAAACAAAAACACCATTGCGCa < 2:2297597‑M2/21‑1 (MQ=255) ccgcgccggaaggcggttatatggtttctAAACAAAAACACCATTGCGCa < 1:4464982‑M2/21‑1 (MQ=255) cgcgccggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAg < 2:3622559‑M2/22‑1 (MQ=255) cgcgccggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAg < 1:2372249‑M2/22‑1 (MQ=255) cgccggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGc < 1:4716284‑M2/24‑1 (MQ=255) gccggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGc > 2:2016050‑M2/26‑49 (MQ=255) gccggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGc > 2:1896521‑M2/26‑49 (MQ=255) gccggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGc > 1:1537986‑M2/26‑49 (MQ=255) gccggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCa < 2:4101031‑M2/25‑1 (MQ=255) ccggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCaa > 1:768241‑M2/25‑50 (MQ=255) ccggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCaa > 1:134725‑M2/25‑50 (MQ=255) cggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCAAt > 1:2862873‑M2/24‑50 (MQ=255) cggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCAAt < 1:5154562‑M2/27‑1 (MQ=255) cggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCAAt > 1:560363‑M2/24‑50 (MQ=255) cggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCAAt > 2:3171531‑M2/24‑50 (MQ=255) cggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCAAt > 2:5841226‑M2/24‑50 (MQ=255) cggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCAAt < 1:24240‑M2/27‑1 (MQ=255) ggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATg > 1:1921729‑M2/23‑50 (MQ=255) ggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATg > 1:4375464‑M2/23‑50 (MQ=255) aaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCAAtggg > 1:5019051‑M2/21‑49 (MQ=255) aggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATGgtg < 2:5738795‑M2/31‑1 (MQ=255) cggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGttt < 1:5238380‑M2/34‑1 (MQ=255) cggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGttt < 2:3576439‑M2/34‑1 (MQ=255) cggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGtt > 2:4823066‑M2/17‑49 (MQ=255) ggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGttt > 1:4930389‑M2/16‑49 (MQ=255) ttatatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAAt < 1:5742354‑M2/37‑1 (MQ=255) tatatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATc > 2:1829487‑M2/13‑50 (MQ=255) tatatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATc > 2:299666‑M2/13‑50 (MQ=255) tatatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATc > 2:3048679‑M2/13‑50 (MQ=255) tatatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATc > 2:1452204‑M2/13‑50 (MQ=255) atatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATc < 1:4304792‑M2/38‑1 (MQ=255) atatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATc < 2:3282767‑M2/38‑1 (MQ=255) atatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCg > 2:1591072‑M2/12‑50 (MQ=255) tatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGt > 1:5834065‑M2/11‑50 (MQ=255) tatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGt < 2:4278389‑M2/40‑1 (MQ=255) tatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGt < 2:46527‑M2/40‑1 (MQ=255) atggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGt > 2:5753802‑M2/10‑49 (MQ=255) tggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCa < 1:2257187‑M2/42‑1 (MQ=255) tggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCa > 2:2078185‑M2/9‑50 (MQ=255) gtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCAtt < 1:1892877‑M2/44‑1 (MQ=255) gtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCAtt < 1:66288‑M2/44‑1 (MQ=255) gtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCAtt < 2:2956279‑M2/44‑1 (MQ=255) gtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCAtt < 2:2937121‑M2/44‑1 (MQ=255) gtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCAt < 2:3595309‑M2/43‑1 (MQ=255) tttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCAtt > 2:2178651‑M2/6‑49 (MQ=255) tttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCAtt > 1:3201212‑M2/6‑49 (MQ=255) tttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCAtt > 1:1755051‑M2/6‑49 (MQ=255) tttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCAtt > 2:2925717‑M2/6‑49 (MQ=255) ttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCAtt > 1:1951386‑M2/5‑48 (MQ=255) tctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGa < 2:3701991‑M2/46‑1 (MQ=255) tctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGa < 2:1389205‑M2/46‑1 (MQ=255) tctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGa < 1:1774965‑M2/46‑1 (MQ=255) tctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAg > 2:4352835‑M2/4‑50 (MQ=255) ctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAg < 1:1145677‑M2/47‑1 (MQ=255) ctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAg < 1:2563453‑M2/47‑1 (MQ=255) tAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAGGa > 2:2765943‑M2/2‑50 (MQ=255) aaacaaaaacaCCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAGGAc > 1:3845352/1‑50 (MQ=255) | GTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAGGAC > NC_000913/1555715‑1555812 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |