| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,040,502 | Δ73,763 bp | [appX]–[mdtG] | 75 genes [appX], appA, etk, etp, gfcE, gfcD, gfcC, gfcB, gfcA, insA‑4, insB‑4, cspH, cspG, ymcF, ymcE, gnsA, yccM, torS, torT, torR, torC, torA, torD, cbpM, cbpA, yccE, agp, yccJ, wrbA, ymdF, rutG, rutF, rutE, rutD, rutC, rutB, rutA, rutR, putA, ymdG, putP, efeU, efeO, efeB, phoH, pgaD, pgaC, pgaB, pgaA, dgcT, insF‑4, insE‑4, ymdE, ycdU, serX, ghrA, ycdX, ycdY, ycdZ, csgG, csgF, csgE, csgD, csgB, csgA, csgC, ymdA, ymdB, clsC, opgC, opgG, opgH, yceK, msyB, [mdtG] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1040502 | 1114264 | 73763 | 119 [0] | [0] 117 | [appX]–[mdtG] | [appX],appA,etk,etp,gfcE,gfcD,gfcC,gfcB,gfcA,insA‑4,insB‑4,cspH,cspG,ymcF,ymcE,gnsA,yccM,torS,torT,torR,torC,torA,torD,cbpM,cbpA,yccE,agp,yccJ,wrbA,ymdF,rutG,rutF,rutE,rutD,rutC,rutB,rutA,rutR,putA,ymdG,putP,efeU,efeO,efeB,phoH,pgaD,pgaC,pgaB,pgaA,dgcT,insF‑4,insE‑4,ymdE,ycdU,serX,ghrA,ycdX,ycdY,ycdZ,csgG,csgF,csgE,csgD,csgB,csgA,csgC,ymdA,ymdB,clsC,opgC,opgG,opgH,yceK,msyB,[mdtG] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1040501 | 0 (0.000) | 114 (1.240) | 62/96 | 0.0 | 100% | coding (57/93 nt) | appX | small protein AppX |
| ? | NC_000913 | 1114265 = | 0 (0.000) | coding (1226/1227 nt) | mdtG | efflux pump MdtG | |||||
Only 100 of 119 total aligned reads displayed.
ATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1040452‑1040501‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAA > NC_000913/1114265‑1114312 ATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT > 1:1192823/1‑50ATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT > 1:4668756/1‑50 TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTC < 1:2887637/50‑1 TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT < 1:4646219/49‑1 TTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT > 1:2779736/1‑48 TACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAG > 1:7115917/1‑50 CTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTT > 1:5211208/1‑50 TTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC > 1:3752878/1‑49 TTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC > 1:1761139/1‑49 TTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC > 1:5630451/1‑49 TGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGA > 1:1487600/1‑50 TGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGA > 1:2430432/1‑50 TGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC < 1:2614887/48‑1 GGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGA > 1:272792/1‑49 GGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGA > 1:446475/1‑49 GGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGA > 1:4465858/1‑49 GTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATA > 1:2800171/1‑50 GTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATA > 1:3793051/1‑50 GTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGAT < 1:2797365/49‑1 GTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGAT < 1:6838926/49‑1 GTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGAT < 1:3724100/49‑1 TTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATAC > 1:7058107/1‑50 TTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATAC < 1:5274608/50‑1 GTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTG < 1:3023778/50‑1 GTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTG > 1:3258160/1‑50 GTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTG < 1:3544341/50‑1 GTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCT < 1:2234951/49‑1 TCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGG < 1:199019/50‑1 TCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGG < 1:5932980/50‑1 CGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGG > 1:2629208/1‑50 CGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGG > 1:3089416/1‑50 GCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGT < 1:4286498/50‑1 GCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGT < 1:1875330/50‑1 GCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGT < 1:6714675/50‑1 GCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGG > 1:2627281/1‑49 GCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGG > 1:4246815/1‑49 GCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGG > 1:2999339/1‑49 GCATTTTGTTGATGTGTTCGCCCTCCACCCTTCAGTTCGATACCTGGGG > 1:5954377/1‑49 ATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTAT > 1:2472064/1‑50 ATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTAT > 1:3618810/1‑50 TTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATT < 1:5988725/50‑1 TTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATT > 1:3466506/1‑50 TTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATT < 1:5669991/50‑1 TTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTC > 1:3628164/1‑50 TTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTC < 1:568430/49‑1 TTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTC < 1:2752657/49‑1 TTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTC < 1:1646318/49‑1 TGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCG < 1:4225317/49‑1 GTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGAC > 1:2372938/1‑50 GTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGA < 1:6326061/49‑1 GTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGA < 1:2425199/49‑1 TTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACG < 1:4064173/50‑1 TTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGAC < 1:5084348/49‑1 TTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTAGGGTATTCGAC < 1:5465958/49‑1 TGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGA > 1:3590823/1‑50 TGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGA > 1:3295439/1‑50 TGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGA > 1:5787994/1‑50 GATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGA < 1:7002549/49‑1 ATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACG < 1:5507281/50‑1 ATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACG < 1:6227235/50‑1 ATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGAC < 1:3252506/49‑1 GTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGAC > 1:4881443/1‑50 TGTTCGCTCTCCTCCCTTCAGTTCGATACCTGGGGTATTCGACGACGAC < 1:5060767/49‑1 TGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACG < 1:1979150/50‑1 TGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACG > 1:3616671/1‑50 TGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGAC < 1:4820505/49‑1 TGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGAC < 1:496699/49‑1 TGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGAC < 1:6103819/49‑1 TGTTCGCTCGCCACCCTTCAGTTCGATTCCTGGGGTATTCGACGACGAC < 1:21037/49‑1 GTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACG > 1:537227/1‑49 TTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTA < 1:6381/50‑1 TCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACG > 1:555670/1‑47 CGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAG < 1:6657618/49‑1 GCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGA < 1:3206564/49‑1 CTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACT < 1:3972520/50‑1 CTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACT > 1:5725672/1‑50 CTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACT > 1:6249634/1‑50 CTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACT < 1:2189216/50‑1 CTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACT < 1:6668638/50‑1 TCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTG > 1:6239069/1‑50 TCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTT > 1:5790762/1‑50 CCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTC > 1:3940805/1‑50 CACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCC < 1:765433/50‑1 CACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCC < 1:5396375/50‑1 CACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCC < 1:2411585/50‑1 CACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTC > 1:103594/1‑49 CACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTC > 1:1118332/1‑49 CACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTC > 1:6804938/1‑49 CACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTC < 1:2578225/49‑1 CACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTC > 1:312497/1‑49 ACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCA > 1:2938530/1‑50 CCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCAT < 1:2575845/50‑1 CCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATG < 1:2423216/50‑1 CCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATG < 1:1756296/50‑1 CTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGA < 1:1288988/50‑1 CTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGA < 1:1071984/50‑1 CTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATG > 1:6753719/1‑49 CTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATG > 1:4995335/1‑49 TTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAA > 1:1334775/1‑50 TTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAA > 1:4398397/1‑50 ATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1040452‑1040501‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAA > NC_000913/1114265‑1114312 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |