| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,040,502 | Δ73,763 bp | [appX]–[mdtG] | 75 genes [appX], appA, etk, etp, gfcE, gfcD, gfcC, gfcB, gfcA, insA‑4, insB‑4, cspH, cspG, ymcF, ymcE, gnsA, yccM, torS, torT, torR, torC, torA, torD, cbpM, cbpA, yccE, agp, yccJ, wrbA, ymdF, rutG, rutF, rutE, rutD, rutC, rutB, rutA, rutR, putA, ymdG, putP, efeU, efeO, efeB, phoH, pgaD, pgaC, pgaB, pgaA, dgcT, insF‑4, insE‑4, ymdE, ycdU, serX, ghrA, ycdX, ycdY, ycdZ, csgG, csgF, csgE, csgD, csgB, csgA, csgC, ymdA, ymdB, clsC, opgC, opgG, opgH, yceK, msyB, [mdtG] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1040502 | 1114264 | 73763 | 119 [0] | [0] 117 | [appX]–[mdtG] | [appX],appA,etk,etp,gfcE,gfcD,gfcC,gfcB,gfcA,insA‑4,insB‑4,cspH,cspG,ymcF,ymcE,gnsA,yccM,torS,torT,torR,torC,torA,torD,cbpM,cbpA,yccE,agp,yccJ,wrbA,ymdF,rutG,rutF,rutE,rutD,rutC,rutB,rutA,rutR,putA,ymdG,putP,efeU,efeO,efeB,phoH,pgaD,pgaC,pgaB,pgaA,dgcT,insF‑4,insE‑4,ymdE,ycdU,serX,ghrA,ycdX,ycdY,ycdZ,csgG,csgF,csgE,csgD,csgB,csgA,csgC,ymdA,ymdB,clsC,opgC,opgG,opgH,yceK,msyB,[mdtG] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1040501 | 0 (0.000) | 114 (1.240) | 62/96 | 0.0 | 100% | coding (57/93 nt) | appX | small protein AppX |
| ? | NC_000913 | 1114265 = | 0 (0.000) | coding (1226/1227 nt) | mdtG | efflux pump MdtG | |||||
Only 100 of 117 total aligned reads displayed.
GAAAAGGATAGCTGATTCTCCGCTTTTGCAAGTATGAAAGGCGAAAAATCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAAT > NC_000913/1114216‑1114313 | tttactttggttcgtcggcattttgttgatgtgttcgctctccacccttc < 1:2887637‑M2/1‑1 (MQ=255)tttactttggttcgtcggcattttgttgatgtgttcgctctccacccttc < 1:3653283‑M2/1‑1 (MQ=255) tactttggttcgtcggcattttgttgatgtgttcgctctccacccttCAg > 1:7115917‑M2/48‑50 (MQ=255) tactttggttcgtcggcattttgttgatgtgttcgctctccacccttCAg > 1:6158037‑M2/48‑50 (MQ=255) ctttggttcgtcggcattttgttgatgtgttcgctctccacccttCAGtt > 1:5211208‑M2/46‑50 (MQ=255) ctttggttcgtcggcattttgttgatgtgttcgctctccacccttCAGt < 1:5552000‑M2/4‑1 (MQ=255) ttggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTc > 1:1761139‑M2/44‑49 (MQ=255) ttggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTc > 1:5630451‑M2/44‑49 (MQ=255) tggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGa > 1:5736994‑M2/43‑50 (MQ=255) tggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGa > 1:2430432‑M2/43‑50 (MQ=255) ggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGa > 1:272792‑M2/42‑49 (MQ=255) ggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGa > 1:446475‑M2/42‑49 (MQ=255) ggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGa > 1:4465858‑M2/42‑49 (MQ=255) ggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGa > 1:1951487‑M2/42‑49 (MQ=255) gttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGAt < 1:3724100‑M2/9‑1 (MQ=255) gttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGAt < 1:2797365‑M2/9‑1 (MQ=255) gttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGAt < 1:6838926‑M2/9‑1 (MQ=255) gttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATa > 1:3793051‑M2/41‑50 (MQ=255) gttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATa > 1:2800171‑M2/41‑50 (MQ=255) ttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATAc < 1:5274608‑M2/11‑1 (MQ=255) ttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATAc > 1:7058107‑M2/40‑50 (MQ=255) cgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCt > 1:5251568‑M2/38‑50 (MQ=255) gtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCt < 1:2234951‑M2/13‑1 (MQ=255) gtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTg < 1:3023778‑M2/14‑1 (MQ=255) gtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTg > 1:3258160‑M2/37‑50 (MQ=255) tcggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTgg > 1:1418149‑M2/36‑50 (MQ=255) tcggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTgg < 1:5932980‑M2/15‑1 (MQ=255) cggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTggg > 1:2629208‑M2/35‑50 (MQ=255) cggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTggg > 1:3089416‑M2/35‑50 (MQ=255) gcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTgggg > 1:2627281‑M2/33‑49 (MQ=255) gcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTgggg > 1:4246815‑M2/33‑49 (MQ=255) gcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTgggg > 1:2999339‑M2/33‑49 (MQ=255) gcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGt < 1:4286498‑M2/18‑1 (MQ=255) gcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGt < 1:6714675‑M2/18‑1 (MQ=255) gcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGt < 1:1875330‑M2/18‑1 (MQ=255) gcattttgttgatgtgttcgccctccacccttCAGTTCGATACCTgggg > 1:5954377‑M2/33‑49 (MQ=255) attttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTAt > 1:3618810‑M2/31‑50 (MQ=255) attttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTAt > 1:2472064‑M2/31‑50 (MQ=255) ttttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTAtt < 1:5669991‑M2/21‑1 (MQ=255) ttttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTAtt > 1:3466506‑M2/30‑50 (MQ=255) tttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTc > 1:3628164‑M2/29‑50 (MQ=255) ttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTc < 1:1646318‑M2/22‑1 (MQ=255) ttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTc < 1:2752657‑M2/22‑1 (MQ=255) tgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcg < 1:4440454‑M2/23‑1 (MQ=255) gttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgac > 1:2372938‑M2/26‑50 (MQ=255) gttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcga < 1:2425199‑M2/24‑1 (MQ=255) gttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcga < 1:6326061‑M2/24‑1 (MQ=255) ttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacg < 1:4064173‑M2/26‑1 (MQ=255) ttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgac < 1:5084348‑M2/25‑1 (MQ=255) tgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacga > 1:3540491‑M2/24‑50 (MQ=255) tgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacga > 1:5787994‑M2/24‑50 (MQ=255) tgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacga > 1:3295439‑M2/24‑50 (MQ=255) tgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacga > 1:3590823‑M2/24‑50 (MQ=255) gatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacga < 1:7002549‑M2/27‑1 (MQ=255) atgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacgacg < 1:5507281‑M2/29‑1 (MQ=255) atgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacgacg < 1:6227235‑M2/29‑1 (MQ=255) atgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacgac < 1:3252506‑M2/28‑1 (MQ=255) gtgttcgctctccacccttCAGTTCGATACCTGGGGTATTCgacgacgac > 1:4881443‑M2/20‑50 (MQ=255) tgttcgctctccacccttCAGTTCGATACCTGGGGTATTCgacgacgac < 1:6103819‑M2/31‑1 (MQ=255) tgttcgctctccacccttCAGTTCGATACCTGGGGTATTCgacgacgac < 1:4820505‑M2/31‑1 (MQ=255) tgttcgctctccacccttCAGTTCGATACCTGGGGTATTCgacgacgac < 1:496699‑M2/31‑1 (MQ=255) tgttcgctctccacccttCAGTTCGATACCTGGGGTATTCGacgacgacg < 1:1979150‑M2/32‑1 (MQ=255) tgttcgctctccacccttCAGTTCGATACCTGGGGTATTCGacgacgacg > 1:3616671‑M2/19‑50 (MQ=255) tgttcgctcgccacccttCAGTTCGATTCCTGGGGTATTCgacgacgac < 1:21037‑M2/31‑1 (MQ=255) gttcgctctccacccttCAGTTCGATACCTGGGGTATTCGacgacgacg > 1:537227‑M2/18‑49 (MQ=255) ttcgctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGt < 1:4057228‑M2/33‑1 (MQ=255) ttcgctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTa < 1:3111010‑M2/34‑1 (MQ=255) tcgctctccacccttCAGTTCGATACCTGGGGTATTCGacgacgacg > 1:555670‑M2/16‑47 (MQ=255) cgctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAg < 1:6657618‑M2/35‑1 (MQ=255) gctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGa < 1:3206564‑M2/36‑1 (MQ=255) ctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACt < 1:3972520‑M2/38‑1 (MQ=255) ctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACt > 1:5725672‑M2/13‑50 (MQ=255) ctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACt < 1:2189216‑M2/38‑1 (MQ=255) ctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACt < 1:6668638‑M2/38‑1 (MQ=255) ctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACt > 1:6249634‑M2/13‑50 (MQ=255) tctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTg > 1:6239069‑M2/12‑50 (MQ=255) tccacccttCAGTTCGATGCCTGGGGTATTCGACGACGACGTAGACTg < 1:4926982‑M2/39‑1 (MQ=255) tccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGtt > 1:5790762‑M2/10‑50 (MQ=255) ccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTc > 1:3940805‑M2/9‑50 (MQ=255) cacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTcc < 1:765433‑M2/43‑1 (MQ=255) cacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTcc < 1:5396375‑M2/43‑1 (MQ=255) cacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTcc < 1:2411585‑M2/43‑1 (MQ=255) cacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTc > 1:103594‑M2/8‑49 (MQ=255) cacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTc > 1:1118332‑M2/8‑49 (MQ=255) cacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTc < 1:2578225‑M2/42‑1 (MQ=255) cacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTc > 1:6804938‑M2/8‑49 (MQ=255) acccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCa > 1:2938530‑M2/7‑50 (MQ=255) acccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCa < 1:2529569‑M2/44‑1 (MQ=255) acccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCa > 1:6393266‑M2/7‑50 (MQ=255) cccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCAt < 1:2281250‑M2/45‑1 (MQ=255) cccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCAt < 1:2575845‑M2/45‑1 (MQ=255) ccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATg < 1:1756296‑M2/46‑1 (MQ=255) cttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATg > 1:4995335‑M2/4‑49 (MQ=255) cttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATg > 1:6753719‑M2/4‑49 (MQ=255) cttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGa < 1:1288988‑M2/47‑1 (MQ=255) cttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGa < 1:1071984‑M2/47‑1 (MQ=255) ttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGaa > 1:1334775‑M2/3‑50 (MQ=255) ttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGaa > 1:4398397‑M2/3‑50 (MQ=255) cAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGaa < 1:4792962/48‑1 (MQ=255) cAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAAt < 1:5613655/49‑1 (MQ=255) | GAAAAGGATAGCTGATTCTCCGCTTTTGCAAGTATGAAAGGCGAAAAATCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAAT > NC_000913/1114216‑1114313 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |