| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 126 [0] | [0] 124 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 124 (1.320) | 71/98 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
Only 100 of 124 total aligned reads displayed.
GCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362114‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > NC_000913/3367643‑3367691 GCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT > 1:2363450/1‑49GCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT > 1:2227956/1‑49 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTA < 1:679968/49‑1 CAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC > 1:5675136/1‑49 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAA > 1:3553659/1‑50 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAA < 1:2989768/50‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAA > 1:6282830/1‑50 GACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAAT < 1:2722103/50‑1 GACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAAT < 1:6588672/50‑1 ACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG > 1:4830727/1‑50 ACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG < 1:3896387/50‑1 ACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCC > 1:3804722/1‑50 ACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCC > 1:5978618/1‑50 ACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCC < 1:3382342/50‑1 ACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCC > 1:5197853/1‑50 CATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG < 1:6282737/50‑1 CATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG < 1:3169286/50‑1 ATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGG < 1:4502449/50‑1 TACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:6587514/1‑49 ACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGAC < 1:884987/49‑1 ACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:5772834/1‑48 ACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:1632836/1‑48 ACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:6340614/1‑48 CATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACA < 1:5046249/49‑1 ATTCACTTTATTTATAACAACATCAATGAATACTAACAATGCCTGACAGG < 1:4886691/50‑1 ATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 1:6067080/1‑49 TTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGA < 1:4926088/50‑1 TTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGA < 1:1262391/50‑1 TCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG > 1:5800222/1‑50 CACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG > 1:309269/1‑49 gCTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGT < 1:3714698/48‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTA > 1:2395031/1‑50 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTA > 1:3640185/1‑50 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTA > 1:3898492/1‑50 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTA < 1:3569828/50‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGT < 1:103891/49‑1 CTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC < 1:5044299/50‑1 CTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC < 1:5159724/50‑1 CTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC < 1:6595745/50‑1 TGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC > 1:1084056/1‑49 TGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC > 1:347868/1‑49 TGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC > 1:193299/1‑49 TGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC > 1:3462151/1‑49 GTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTA > 1:2865284/1‑50 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:2506368/1‑50 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:4035446/1‑50 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:2092197/1‑50 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTA < 1:4643880/49‑1 ATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:3520130/1‑49 ATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:3997538/1‑49 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCA < 1:5201112/50‑1 TTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG > 1:1707489/1‑50 TATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG > 1:4852551/1‑50 TATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG < 1:6978983/49‑1 ATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG < 1:3312013/49‑1 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTGCTATCAGGCA < 1:1388296/50‑1 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCA > 1:3761996/1‑50 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCA > 1:4531580/1‑50 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGC < 1:3265433/49‑1 AACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCAT > 1:4940641/1‑50 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATT < 1:5202812/50‑1 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATT < 1:4343439/50‑1 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCAT < 1:5500280/49‑1 CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC > 1:1397082/1‑50 CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC > 1:2871796/1‑50 CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC < 1:366334/50‑1 ACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGT < 1:2281283/50‑1 ACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGT < 1:196453/50‑1 ACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGT > 1:4678967/1‑50 ACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGT > 1:6369388/1‑50 ACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGT > 1:4506700/1‑50 ACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGT < 1:6921343/50‑1 CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTT > 1:5093110/1‑50 ATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT < 1:4139196/50‑1 ATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT < 1:830763/50‑1 ATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT > 1:6040104/1‑50 TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTT < 1:1729171/50‑1 CAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:4590298/1‑50 CAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:2027531/1‑50 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:3865319/1‑49 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA < 1:615737/49‑1 TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC < 1:3498199/50‑1 TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 1:1111266/1‑50 GAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 1:917441/1‑49 GAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 1:882713/1‑49 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA < 1:4799425/50‑1 ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAT < 1:1275864/50‑1 ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAT > 1:135142/1‑50 ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAT > 1:2872480/1‑50 ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAT > 1:2221256/1‑50 ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAT < 1:1711597/50‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC < 1:2448651/50‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC < 1:5761177/50‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC < 1:2972501/50‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC < 1:7065871/50‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC < 1:3775537/50‑1 ACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG > 1:3690896/1‑50 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > 1:1402739/1‑50 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > 1:7023529/1‑50 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG < 1:3438974/49‑1 GCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362114‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > NC_000913/3367643‑3367691 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |