| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 126 [0] | [0] 124 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 124 (1.320) | 71/98 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
Only 100 of 124 total aligned reads displayed.
AAAATCGAACTTGATGGGAAAGCTGTGATAAGCGTAGTCTACTTGTGATAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > NC_000913/3367595‑3367691 | gctcagacacattacattcactgtatttataacaacatcaatgaatact > 1:2363450‑M2/49‑49 (MQ=255)gctcagacacattacattcactgtatttataacaacatcaatgaatact > 1:2227956‑M2/49‑49 (MQ=255) ctcagacacattacattcactgtatttataacaacatcaatgaatacTa < 1:679968‑M2/2‑1 (MQ=255) cagacacattacattcactgtatttataacaacatcaatgaatacTAAc > 1:5675136‑M2/46‑49 (MQ=255) agacacattacattcactgtatttataacaacatcaatgaatacTAACaa > 1:3553659‑M2/45‑50 (MQ=255) agacacattacattcactgtatttataacaacatcaatgaatacTAACaa < 1:2989768‑M2/6‑1 (MQ=255) agacacattacattcactgtatttataacaacatcaatgaatacTAACaa > 1:6282830‑M2/45‑50 (MQ=255) gacacattacattcactgtatttataacaacatcaatgaatacTAACAAt < 1:2722103‑M2/7‑1 (MQ=255) gacacattacattcactgtatttataacaacatcaatgaatacTAACAAt < 1:6588672‑M2/7‑1 (MQ=255) acacattacattcactgtatttataacaacatcaatgaatacTAACAATg > 1:4830727‑M2/43‑50 (MQ=255) acacattacattcactgtatttataacaacatcaatgaatacTAACAATg < 1:3896387‑M2/8‑1 (MQ=255) acattacattcactgtatttataacaacatcaatgaatacTAACAATGcc > 1:3804722‑M2/41‑50 (MQ=255) acattacattcactgtatttataacaacatcaatgaatacTAACAATGcc > 1:5978618‑M2/41‑50 (MQ=255) acattacattcactgtatttataacaacatcaatgaatacTAACAATGcc < 1:3382342‑M2/10‑1 (MQ=255) acattacattcactgtatttataacaacatcaatgaatacTAACAATGcc > 1:5197853‑M2/41‑50 (MQ=255) cattacattcactgtatttataacaacatcaatgaatacTAACAATGCCg < 1:6282737‑M2/11‑1 (MQ=255) cattacattcactgtatttataacaacatcaatgaatacTAACAATGCCg < 1:3169286‑M2/11‑1 (MQ=255) attacattcactgtatttataacaacatcaatgaatacTAACAATGCCgg < 1:4502449‑M2/12‑1 (MQ=255) tacattcactgtatttataacaacatcaatgaatacTAACAATGCCGGa > 1:6587514‑M2/37‑49 (MQ=255) acattcactgtatttataacaacatcaatgaatacTAACAATGCCGGa > 1:5772834‑M2/36‑48 (MQ=255) acattcactgtatttataacaacatcaatgaatacTAACAATGCCGGa > 1:1632836‑M2/36‑48 (MQ=255) acattcactgtatttataacaacatcaatgaatacTAACAATGCCGGa > 1:6340614‑M2/36‑48 (MQ=255) acattcactgtatttataacaacatcaatgaatacTAACAATGCCGGAc < 1:884987‑M2/14‑1 (MQ=255) cattcactgtatttataacaacatcaatgaatacTAACAATGCCGGACa < 1:5046249‑M2/15‑1 (MQ=255) attcactttatttataacaacatcaatgaatacTAACAATGCCTGACAgg < 1:4886691‑M2/17‑1 (MQ=255) attcactgtatttataacaacatcaatgaatacTAACAATGCCGGACAg > 1:6067080‑M2/34‑49 (MQ=255) ttcactgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGa < 1:4926088‑M2/18‑1 (MQ=255) ttcactgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGa < 1:1262391‑M2/18‑1 (MQ=255) tcactgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAg > 1:5800222‑M2/32‑50 (MQ=255) cactgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAg > 1:309269‑M2/31‑49 (MQ=255) gctgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGt < 1:3714698‑M2/20‑1 (MQ=255) actgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGt < 1:103891‑M2/20‑1 (MQ=255) actgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTa > 1:2395031‑M2/30‑50 (MQ=255) actgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTa > 1:3640185‑M2/30‑50 (MQ=255) actgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTa > 1:3898492‑M2/30‑50 (MQ=255) actgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTa < 1:3569828‑M2/21‑1 (MQ=255) ctgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTAc < 1:5044299‑M2/22‑1 (MQ=255) ctgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTAc < 1:5159724‑M2/22‑1 (MQ=255) ctgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTAc < 1:6595745‑M2/22‑1 (MQ=255) tgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTAc > 1:1084056‑M2/28‑49 (MQ=255) tgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTAc > 1:347868‑M2/28‑49 (MQ=255) tgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTAc > 1:193299‑M2/28‑49 (MQ=255) tgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTAc > 1:3462151‑M2/28‑49 (MQ=255) gtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTa > 1:2865284‑M2/27‑50 (MQ=255) tatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTa < 1:4643880‑M2/24‑1 (MQ=255) tatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTAt > 1:2506368‑M2/26‑50 (MQ=255) tatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTAt > 1:4035446‑M2/26‑50 (MQ=255) tatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTAt > 1:2092197‑M2/26‑50 (MQ=255) atttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTAt > 1:3520130‑M2/25‑49 (MQ=255) atttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTAt > 1:3997538‑M2/25‑49 (MQ=255) tttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCa < 1:5201112‑M2/27‑1 (MQ=255) ttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAg > 1:1707489‑M2/23‑50 (MQ=255) tataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAgg > 1:4852551‑M2/22‑50 (MQ=255) tataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAg < 1:6978983‑M2/28‑1 (MQ=255) ataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAgg < 1:3312013‑M2/29‑1 (MQ=255) taacaacatcaatgaatacTAACAATGCCGGACAGGAGTGCTATCAGGCa < 1:1388296‑M2/31‑1 (MQ=255) taacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGc < 1:3265433‑M2/30‑1 (MQ=255) taacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCa > 1:4531580‑M2/20‑50 (MQ=255) taacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCa > 1:3761996‑M2/20‑50 (MQ=255) aacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCAt > 1:4940641‑M2/19‑50 (MQ=255) acaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCAtt < 1:5202812‑M2/33‑1 (MQ=255) acaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCAtt < 1:4343439‑M2/33‑1 (MQ=255) acaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCAt < 1:5500280‑M2/32‑1 (MQ=255) caacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTc > 1:1397082‑M2/17‑50 (MQ=255) caacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTc > 1:2871796‑M2/17‑50 (MQ=255) caacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTc < 1:366334‑M2/34‑1 (MQ=255) acatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGt < 1:2281283‑M2/36‑1 (MQ=255) acatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGt < 1:196453‑M2/36‑1 (MQ=255) acatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGt > 1:4678967‑M2/15‑50 (MQ=255) acatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGt > 1:6369388‑M2/15‑50 (MQ=255) acatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGt > 1:4506700‑M2/15‑50 (MQ=255) acatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGt < 1:6921343‑M2/36‑1 (MQ=255) catcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGtt > 1:5093110‑M2/14‑50 (MQ=255) atcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGttt < 1:4139196‑M2/38‑1 (MQ=255) atcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGttt < 1:830763‑M2/38‑1 (MQ=255) atcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGttt > 1:6040104‑M2/13‑50 (MQ=255) tcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGtttt < 1:1729171‑M2/39‑1 (MQ=255) caatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTta > 1:4590298‑M2/11‑50 (MQ=255) caatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTta > 1:2027531‑M2/11‑50 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTta > 1:3865319‑M2/10‑49 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTta < 1:615737‑M2/40‑1 (MQ=255) tgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAc < 1:3498199‑M2/43‑1 (MQ=255) tgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAc > 1:1111266‑M2/8‑50 (MQ=255) gaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAc > 1:917441‑M2/7‑49 (MQ=255) gaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAc > 1:882713‑M2/7‑49 (MQ=255) aatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGa < 1:4799425‑M2/45‑1 (MQ=255) atacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAt < 1:1275864‑M2/46‑1 (MQ=255) atacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAt > 1:135142‑M2/5‑50 (MQ=255) atacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAt > 1:2872480‑M2/5‑50 (MQ=255) atacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAt > 1:2221256‑M2/5‑50 (MQ=255) atacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAt < 1:1711597‑M2/46‑1 (MQ=255) tacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATc < 1:2448651‑M2/47‑1 (MQ=255) tacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATc < 1:5761177‑M2/47‑1 (MQ=255) tacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATc < 1:2972501‑M2/47‑1 (MQ=255) tacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATc < 1:7065871‑M2/47‑1 (MQ=255) tacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATc < 1:3775537‑M2/47‑1 (MQ=255) acTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCg > 1:3690896‑M2/3‑50 (MQ=255) cTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCgg > 1:1402739‑M2/2‑50 (MQ=255) cTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCgg > 1:7023529‑M2/2‑50 (MQ=255) cTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCg < 1:3438974‑M2/48‑1 (MQ=255) | AAAATCGAACTTGATGGGAAAGCTGTGATAAGCGTAGTCTACTTGTGATAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > NC_000913/3367595‑3367691 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |