| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,400,289 | Δ7 bp | coding (2‑8/309 nt) | hfq → | RNA‑binding protein Hfq |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4400289 | 4400295 | 7 | 110 [0] | [0] 112 | hfq | RNA‑binding protein Hfq |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4400288 | 0 (0.000) | 103 (1.140) | 62/94 | 0.0 | 100% | coding (1/309 nt) | hfq | RNA‑binding protein Hfq |
| ? | NC_000913 | 4400296 = | 0 (0.000) | coding (9/309 nt) | hfq | RNA‑binding protein Hfq | |||||
Only 100 of 111 total aligned reads displayed.
CAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4400239‑4400288‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGT > NC_000913/4400296‑4400344 CAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGA < 1:6283018/49‑1 AGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAG > 1:4329053/1‑50 GAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGG < 1:336593/50‑1 GAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGG < 1:7023748/50‑1 GAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGG < 1:3676901/50‑1 AATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGG > 1:921607/1‑50 AATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGG > 1:5588004/1‑50 AATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGG < 1:3803521/50‑1 AATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGG < 1:6420942/50‑1 ATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGG > 1:1993960/1‑50 ATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGG > 1:3887151/1‑50 ATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGG > 1:2162840/1‑50 ATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGG < 1:416379/50‑1 ATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGG > 1:5326615/1‑50 TCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGG > 1:4525869/1‑49 GAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAA > 1:6767545/1‑50 GAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAA > 1:1782501/1‑50 GAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAA > 1:1469361/1‑50 GAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAA > 1:5662594/1‑50 AAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAAT < 1:6444888/50‑1 AAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAAT > 1:3074052/1‑50 AAGGTTCAAAGTTCAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATC < 1:1890313/50‑1 AAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATC > 1:919358/1‑50 AGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCT > 1:662685/1‑50 GTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTT > 1:3493341/1‑49 TTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTA < 1:6077350/50‑1 TTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTA > 1:1344806/1‑50 TTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTA < 1:154777/50‑1 TCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTA > 1:3057655/1‑49 TCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTA > 1:6677645/1‑49 CAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC < 1:3047916/49‑1 CAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC > 1:5702853/1‑49 CAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC > 1:4809224/1‑49 AAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACA < 1:6822714/49‑1 AAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACA < 1:3993445/49‑1 AAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC > 1:4682243/1‑48 AAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC > 1:845346/1‑48 AAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC > 1:5809475/1‑47 AAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC > 1:4077492/1‑47 AGTACAAATTATCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGA < 1:2367961/50‑1 AGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC > 1:6281693/1‑46 GTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGAT < 1:1806195/50‑1 GTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGAT < 1:7024177/50‑1 GTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC > 1:1421483/1‑45 TACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATC > 1:518158/1‑50 TACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATC < 1:6928315/50‑1 AAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGT > 1:2374631/1‑50 AAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGT < 1:6088543/50‑1 AATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTT > 1:390928/1‑50 ATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTC > 1:5004368/1‑50 ATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTC > 1:6783962/1‑50 ATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTC > 1:5756758/1‑50 TAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCC < 1:815632/50‑1 AAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCT > 1:5350397/1‑50 AGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTG < 1:3523716/50‑1 AGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCT < 1:1357722/49‑1 AGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCT < 1:5977514/49‑1 GCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGA < 1:3354584/50‑1 GCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGA < 1:4046099/50‑1 GCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGA < 1:7034924/50‑1 GCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTG > 1:3254016/1‑49 CATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAA > 1:3175319/1‑50 CATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAA > 1:1543649/1‑50 TATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACG > 1:3699721/1‑50 AAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCAC > 1:1176461/1‑50 AAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCAC > 1:5698895/1‑50 AGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACT < 1:4651347/50‑1 AGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACT < 1:502494/50‑1 AGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACT < 1:3529720/50‑1 AGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACT < 1:6315364/50‑1 GGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTG > 1:5672963/1‑50 GAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGC > 1:4698018/1‑50 AAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCG < 1:290850/50‑1 AAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCG > 1:1557938/1‑50 AAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCG > 1:2571867/1‑50 AAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGT > 1:693168/1‑50 AAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTC < 1:1122855/50‑1 AAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTC > 1:137318/1‑50 AAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTC < 1:5941375/50‑1 AAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTC < 1:5041813/50‑1 AAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTC < 1:2519105/50‑1 AAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTC < 1:3685497/50‑1 AGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCG < 1:1876785/50‑1 AGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCG > 1:3340226/1‑50 GAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGG > 1:1488104/1‑50 AGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGG < 1:2879993/50‑1 AGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGG > 1:2591068/1‑49 AGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGG > 1:2834714/1‑49 GAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGA < 1:6312207/50‑1 AGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAA > 1:2738381/1‑50 GAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAC < 1:340424/50‑1 GAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAC < 1:1062721/50‑1 GAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAC < 1:6026875/50‑1 GAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAC < 1:3672289/50‑1 GAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAC < 1:6080025/50‑1 AAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACG < 1:411895/50‑1 AAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACG < 1:4463663/50‑1 AAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACG > 1:460135/1‑50 AGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGT < 1:5981561/50‑1 AGGGGCAATCTTTACAAGAGCCGTTCCTGAACGCACTGCGTCGGGAACGT < 1:1758360/50‑1 CAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4400239‑4400288‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGT > NC_000913/4400296‑4400344 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |