BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	4,400,289	Δ7 bp	coding (2‑8/309 nt)	hfq →	RNA‑binding protein Hfq

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	4400289	4400295	7	110 [0]	[0] 112	hfq	RNA‑binding protein Hfq

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4400288	0 (0.000)	103 (1.140)	62/94	0.0	100%	coding (1/309 nt)	hfq	RNA‑binding protein Hfq
*	?	NC_000913	4400296 =	0 (0.000)	103 (1.140)	62/94	0.0	100%	coding (9/309 nt)	hfq	RNA‑binding protein Hfq

Only 100 of 110 total aligned reads displayed.

AGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCG  >  NC_000913/4400240‑4400337

aGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAg                                                  >  1:4329053‑M1/1‑49 (MQ=255)

aGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAg                                                  <  1:3464752‑M1/50‑2 (MQ=255)

 gAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAgg                                                 <  1:3676901‑M1/50‑3 (MQ=255)

 gAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAgg                                                 <  1:336593‑M1/50‑3 (MQ=255)

 gAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAgg                                                 <  1:7023748‑M1/50‑3 (MQ=255)

  aaTCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggg                                                >  1:921607‑M1/1‑47 (MQ=255)

  aaTCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggg                                                <  1:5825832‑M1/50‑4 (MQ=255)

  aaTCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggg                                                >  1:5588004‑M1/1‑47 (MQ=255)

  aaTCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggg                                                <  1:6420942‑M1/50‑4 (MQ=255)

  aaTCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggg                                                <  1:3803521‑M1/50‑4 (MQ=255)

   aTCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAgggg                                               <  1:416379‑M1/50‑5 (MQ=255)

   aTCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAgggg                                               >  1:1993960‑M1/1‑46 (MQ=255)

   aTCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAgggg                                               >  1:2162840‑M1/1‑46 (MQ=255)

   aTCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAgggg                                               >  1:3887151‑M1/1‑46 (MQ=255)

   aTCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAgggg                                               >  1:5326615‑M1/1‑46 (MQ=255)

    tCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAgggg                                               >  1:4525869‑M1/1‑45 (MQ=255)

      gAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaa                                            >  1:1782501‑M1/1‑43 (MQ=255)

      gAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaa                                            <  1:4600374‑M1/50‑8 (MQ=255)

      gAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaa                                            >  1:6767545‑M1/1‑43 (MQ=255)

      gAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaa                                            >  1:5662594‑M1/1‑43 (MQ=255)

      gAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaa                                            >  1:1469361‑M1/1‑43 (MQ=255)

       aaaGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaat                                           >  1:3074052‑M1/1‑42 (MQ=255)

       aaaGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaat                                           <  1:6444888‑M1/50‑9 (MQ=255)

        aaGGTTCAAAGTTCAAATAAGCATATAAGGAAAAGAGAGAAggggcaatc                                          <  1:1890313‑M1/50‑10 (MQ=255)

        aaGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatc                                          >  1:919358‑M1/1‑41 (MQ=255)

         aGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatct                                         >  1:662685‑M1/1‑40 (MQ=255)

           gTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctt                                        >  1:3493341‑M1/1‑38 (MQ=255)

            ttCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatcttta                                      <  1:154777‑M1/50‑14 (MQ=255)

            ttCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatcttta                                      <  1:6077350‑M1/50‑14 (MQ=255)

            ttCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatcttta                                      >  1:1344806‑M1/1‑37 (MQ=255)

             tCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatcttta                                      >  1:6677645‑M1/1‑36 (MQ=255)

              cAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttac                                     <  1:3047916‑M1/49‑15 (MQ=255)

              cAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttac                                     >  1:5702853‑M1/1‑35 (MQ=255)

               aaaGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttaca                                    <  1:3993445‑M1/49‑16 (MQ=255)

               aaaGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttac                                     >  1:845346‑M1/1‑34 (MQ=255)

               aaaGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttac                                     >  1:4682243‑M1/1‑34 (MQ=255)

                aaGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttac                                     >  1:5809475‑M1/1‑33 (MQ=255)

                 aGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttac                                     >  1:6281693‑M1/1‑32 (MQ=255)

                  gTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagat                                <  1:1806195‑M1/50‑20 (MQ=255)

                  gTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagat                                <  1:7024177‑M1/50‑20 (MQ=255)

                  gTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttac                                     >  1:1421483‑M1/1‑31 (MQ=255)

                   tACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatc                               <  1:6300887‑M1/50‑21 (MQ=255)

                   tACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatc                               <  1:6928315‑M1/50‑21 (MQ=255)

                   tACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatc                               >  1:518158‑M1/1‑30 (MQ=255)

                     cAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccg                             >  1:3022234‑M1/1‑28 (MQ=255)

                      aaaTAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgt                            >  1:2374631‑M1/1‑27 (MQ=255)

                       aaTAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgtt                           >  1:390928‑M1/1‑26 (MQ=255)

                        aTAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttc                          >  1:5756758‑M1/1‑25 (MQ=255)

                        aTAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttc                          >  1:5004368‑M1/1‑25 (MQ=255)

                        aTAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttc                          >  1:6783962‑M1/1‑25 (MQ=255)

                         tAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcc                         <  1:815632‑M1/50‑27 (MQ=255)

                          aaGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcct                        >  1:5350397‑M1/1‑23 (MQ=255)

                           aGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctg                       <  1:3523716‑M1/50‑29 (MQ=255)

                           aGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcct                        <  1:5977514‑M1/49‑28 (MQ=255)

                           aGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcct                        <  1:1357722‑M1/49‑28 (MQ=255)

                            gCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctga                      <  1:4046099‑M1/50‑30 (MQ=255)

                            gCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctga                      <  1:7034924‑M1/50‑30 (MQ=255)

                            gCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctga                      <  1:3354584‑M1/50‑30 (MQ=255)

                            gCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctg                       >  1:3254016‑M1/1‑21 (MQ=255)

                             cATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaa                     >  1:1543649‑M1/1‑20 (MQ=255)

                             cATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaa                     >  1:3175319‑M1/1‑20 (MQ=255)

                               tataAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacg                   >  1:3699721‑M1/1‑18 (MQ=255)

                                  aaGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacgcac                >  1:1176461‑M1/1‑15 (MQ=255)

                                   aGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacgcact               >  1:5202278‑M1/1‑14 (MQ=255)

                                   aGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacgcact               <  1:6315364‑M1/50‑37 (MQ=255)

                                   aGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacgcact               <  1:502494‑M1/50‑37 (MQ=255)

                                   aGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacgcact               <  1:4651347‑M1/50‑37 (MQ=255)

                                    ggAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacgcactg              >  1:5672963‑M1/1‑13 (MQ=255)

                                     gAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgc             >  1:4698018‑M1/1‑12 (MQ=255)

                                     gAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgc             <  1:2286657‑M1/50‑39 (MQ=255)

                                      aaaaGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgcg            <  1:290850‑M1/50‑40 (MQ=255)

                                      aaaaGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgcg            >  1:2571867‑M1/1‑11 (MQ=255)

                                      aaaaGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgcg            >  1:1557938‑M1/1‑11 (MQ=255)

                                       aaaGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgcgt           >  1:693168‑M1/1‑10 (MQ=255)

                                        aaGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgcgtc          <  1:1122855‑M1/50‑42 (MQ=255)

                                        aaGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgcgtc          >  1:137318‑M1/1‑9 (MQ=255)

                                        aaGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgcgtc          <  1:5041813‑M1/50‑42 (MQ=255)

                                        aaGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgcgtc          <  1:2519105‑M1/50‑42 (MQ=255)

                                        aaGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgcgtc          <  1:3685497‑M1/50‑42 (MQ=255)

                                        aaGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgcgtc          <  1:5941375‑M1/50‑42 (MQ=255)

                                         agagagAAggggcaatctttacaagatccgttcctgaacgcactgcgtcg         <  1:1876785‑M1/50‑43 (MQ=255)

                                         agagagAAggggcaatctttacaagatccgttcctgaacgcactgcgtcg         >  1:3340226‑M1/1‑8 (MQ=255)

                                         agagagAAggggcaatctttacaagatccgttcctgaacgcactgcgtcg         >  1:6834108‑M1/1‑8 (MQ=255)

                                          gagagaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgg        >  1:1488104‑M1/1‑7 (MQ=255)

                                           agagaAggggcaatctttacaagatccgttcctgaacgcactgcgtcggg       <  1:2879993‑M1/50‑45 (MQ=255)

                                           agagaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgg        >  1:2591068‑M1/1‑6 (MQ=255)

                                           agagaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgg        >  1:2834714‑M1/1‑6 (MQ=255)

                                            gagaAggggcaatctttacaagatccgttcctgaacgcactgcgtcggga      <  1:6312207‑M1/50‑46 (MQ=255)

                                             agaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaa     >  1:2738381‑M1/1‑4 (MQ=255)

                                              gaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaac    <  1:340424‑M1/50‑48 (MQ=255)

                                              gaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaac    <  1:1062721‑M1/50‑48 (MQ=255)

                                              gaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaac    <  1:3672289‑M1/50‑48 (MQ=255)

                                              gaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaac    <  1:6080025‑M1/50‑48 (MQ=255)

                                              gaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaac    <  1:6026875‑M1/50‑48 (MQ=255)

                                               aaggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaacg   <  1:3893169‑M1/50‑49 (MQ=255)

                                               aaggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaacg   <  1:411895‑M1/50‑49 (MQ=255)

                                               aaggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaacg   <  1:4463663‑M1/50‑49 (MQ=255)

                                               aaggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaacg   >  1:460135‑M1/1‑2 (MQ=255)

                                                aggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaacgt  <  1:5981561‑M1/50‑50 (MQ=255)

                                                aggggcaatctttacaagagccgttcctgaacgcactgcgtcgggaacgt  <  1:1758360‑M1/50‑50 (MQ=255)

AGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCG  >  NC_000913/4400240‑4400337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`