| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,129,397 | Δ11,591 bp | flgN–flgL | flgN, flgM, flgA, flgB, flgC, flgD, flgE, flgF, flgG, flgH, flgI, flgJ, flgK, flgL | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1129397 | 1140987 | 11591 | 77 [0] | [0] 78 | flgN–flgL | flgN,flgM,flgA,flgB,flgC,flgD,flgE,flgF,flgG,flgH,flgI,flgJ,flgK,flgL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1129396 | 0 (0.000) | 77 (0.820) | 47/98 | 0.1 | 100% | intergenic (+22/+18) | murJ/flgN | putative lipid II flippase MurJ/flagellar biosynthesis protein FlgN |
| ? | NC_000913 | 1140988 = | 0 (0.000) | intergenic (+2/+194) | flgL/rne | flagellar hook‑filament junction protein 2/ribonuclease E | |||||
AAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGCAGGCCGGAGATAATCTTCAGATCGAAATCTTTTTACCGCCGCGATGG > NC_000913/1129349‑1129444 | aaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGtt > 1:6090497‑M1/1‑48 (MQ=255)aaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGtt < 1:4199796‑M1/50‑3 (MQ=255)aaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGtt > 1:4005348‑M1/1‑48 (MQ=255)aaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGtt > 1:2244773‑M1/1‑48 (MQ=255)aaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGt < 1:4879387‑M1/49‑2 (MQ=255) aGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttc < 1:5417458‑M1/50‑4 (MQ=255) gAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcg < 1:2530263‑M1/50‑5 (MQ=255) aaTTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgc > 1:4255194‑M1/1‑45 (MQ=255) aaTTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgc > 1:4957263‑M1/1‑45 (MQ=255) aaTTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgc > 1:5434815‑M1/1‑45 (MQ=255) aTTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgct > 1:3960432‑M1/1‑44 (MQ=255) aTTTGCCCGCCGGACGGTGTAACAATGCATGCCGGCCTGCAGTGttcgct < 1:5050712‑M1/50‑7 (MQ=255) tttGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctt > 1:763287‑M1/1‑43 (MQ=255) ttGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctt > 1:733612‑M1/1‑42 (MQ=255) ttGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctt > 1:6157639‑M1/1‑42 (MQ=255) ttGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctt > 1:4878583‑M1/1‑42 (MQ=255) tGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgcttt > 1:2989070‑M1/1‑41 (MQ=255) tGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgcttt > 1:3412265‑M1/1‑41 (MQ=255) cccGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaa < 1:474653‑M1/50‑12 (MQ=255) cccGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaa > 1:190629‑M1/1‑39 (MQ=255) cccGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaa < 1:5404343‑M1/49‑11 (MQ=255) cccGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaa < 1:3615286‑M1/49‑11 (MQ=255) tgccggACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaa > 1:109322‑M1/2‑37 (MQ=255) cgccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaac < 1:1555155‑M1/50‑14 (MQ=255) ggACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat > 1:3972583‑M1/1‑33 (MQ=255) ggACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat < 1:1558025‑M1/50‑18 (MQ=255) ggACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat < 1:4528554‑M1/50‑18 (MQ=255) ggACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat < 1:1236911‑M1/50‑18 (MQ=255) ggACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat > 1:5007762‑M1/1‑33 (MQ=255) gACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatc < 1:2984348‑M1/50‑19 (MQ=255) gACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat > 1:1767363‑M1/1‑32 (MQ=255) aCGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatca < 1:4607750‑M1/50‑20 (MQ=255) aCGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatca > 1:4583874‑M1/1‑31 (MQ=255) aCGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatca < 1:3164633‑M1/50‑20 (MQ=255) aCGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatca < 1:1842561‑M1/50‑20 (MQ=255) aCGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatca > 1:6245086‑M1/1‑31 (MQ=255) cGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcat > 1:2269662‑M1/1‑30 (MQ=255) ggTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcat > 1:892409‑M1/1‑29 (MQ=255) gtgtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatga < 1:1591701‑M1/50‑23 (MQ=255) tgtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatga > 1:2603528‑M1/1‑27 (MQ=255) gtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaa > 1:1652365‑M1/1‑26 (MQ=255) gtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaa > 1:172020‑M1/1‑26 (MQ=255) aaCAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaact > 1:1562221‑M1/1‑24 (MQ=255) aaCAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaact > 1:5342511‑M1/1‑24 (MQ=255) aCAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaact < 1:3966798‑M1/49‑27 (MQ=255) aCAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaact < 1:1560364‑M1/49‑27 (MQ=255) cAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgg > 1:6841243‑M1/1‑22 (MQ=255) aaTGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactggg > 1:946267‑M1/1‑21 (MQ=255) aTGCATTCCGGCCTGCAGTGttcgctttaacacatatcctgaaactggg > 1:1116134‑M1/1‑20 (MQ=255) aTGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggt < 1:5676450‑M1/50‑31 (MQ=255) aTGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactggg > 1:4875826‑M1/1‑20 (MQ=255) aTGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactggg > 1:737457‑M1/1‑20 (MQ=255) aTGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactggg > 1:3020535‑M1/1‑20 (MQ=255) cATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatg < 1:262001‑M1/50‑34 (MQ=255) cATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtat < 1:3799032‑M1/49‑33 (MQ=255) cATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtat < 1:6709103‑M1/49‑33 (MQ=255) cATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtat < 1:3457718‑M1/49‑33 (MQ=255) ttCCGGCATGCAGTGttcgatttaaaacatatcatgaaactgggtatgtt < 1:324728‑M1/50‑36 (MQ=255) tCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttt > 1:3652357‑M1/1‑14 (MQ=255) ccGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgtttt > 1:2419475‑M1/1‑13 (MQ=255) cGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttg > 1:934261‑M1/1‑12 (MQ=255) cGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgtttt < 1:5074565‑M1/49‑38 (MQ=255) cGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgtttt < 1:6989816‑M1/49‑38 (MQ=255) cGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgtttt < 1:6887929‑M1/49‑38 (MQ=255) ggCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgt > 1:896202‑M1/1‑11 (MQ=255) gCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtc < 1:6571731‑M1/50‑41 (MQ=255) ccTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtct < 1:733034‑M1/50‑42 (MQ=255) cTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctg > 1:1670854‑M1/1‑8 (MQ=255) cTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctg > 1:505363‑M1/1‑8 (MQ=255) cAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcct < 1:1679751‑M1/50‑46 (MQ=255) cAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcct > 1:2587999‑M1/1‑5 (MQ=255) aGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctg > 1:190637‑M1/1‑4 (MQ=255) aGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctg > 1:2326757‑M1/1‑4 (MQ=255) aGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctg > 1:5822723‑M1/1‑4 (MQ=255) aGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctg > 1:3466785‑M1/1‑4 (MQ=255) tgttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctgct > 1:1688286‑M1/1‑2 (MQ=255) tgttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctgct > 1:1294889‑M1/1‑2 (MQ=255) | AAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGCAGGCCGGAGATAATCTTCAGATCGAAATCTTTTTACCGCCGCGATGG > NC_000913/1129349‑1129444 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |