| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,129,397 | Δ11,591 bp | flgN–flgL | flgN, flgM, flgA, flgB, flgC, flgD, flgE, flgF, flgG, flgH, flgI, flgJ, flgK, flgL | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1129397 | 1140987 | 11591 | 77 [0] | [0] 78 | flgN–flgL | flgN,flgM,flgA,flgB,flgC,flgD,flgE,flgF,flgG,flgH,flgI,flgJ,flgK,flgL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1129396 | 0 (0.000) | 77 (0.820) | 47/98 | 0.1 | 100% | intergenic (+22/+18) | murJ/flgN | putative lipid II flippase MurJ/flagellar biosynthesis protein FlgN |
| ? | NC_000913 | 1140988 = | 0 (0.000) | intergenic (+2/+194) | flgL/rne | flagellar hook‑filament junction protein 2/ribonuclease E | |||||
CATTTACCGATATGCAGGGATTGTCGCTCTTCCAGCTCAGCAAATAATTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCTCT > NC_000913/1140940‑1141037 | aagaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgtt > 1:6090497‑M2/49‑50 (MQ=255)aagaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgtt < 1:4199796‑M2/2‑1 (MQ=255)aagaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgtt > 1:4005348‑M2/49‑50 (MQ=255)aagaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgtt > 1:2244773‑M2/49‑50 (MQ=255)aagaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgt < 1:4879387‑M2/1‑1 (MQ=255) agaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTc < 1:5417458‑M2/3‑1 (MQ=255) gaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCg < 1:2530263‑M2/4‑1 (MQ=255) aatttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGc > 1:4255194‑M2/46‑50 (MQ=255) aatttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGc > 1:4957263‑M2/46‑50 (MQ=255) aatttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGc > 1:5434815‑M2/46‑50 (MQ=255) atttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCt > 1:3960432‑M2/45‑50 (MQ=255) atttgcccgccggacggtgtaacaatgcatgccggcctgcagtgTTCGCt < 1:5050712‑M2/6‑1 (MQ=255) tttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCtt > 1:763287‑M2/44‑50 (MQ=255) ttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCtt > 1:733612‑M2/43‑49 (MQ=255) ttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCtt > 1:6157639‑M2/43‑49 (MQ=255) ttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCtt > 1:4878583‑M2/43‑49 (MQ=255) tgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCttt > 1:2989070‑M2/42‑49 (MQ=255) tgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCttt > 1:3412265‑M2/42‑49 (MQ=255) cccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTaaa < 1:474653‑M2/11‑1 (MQ=255) cccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTaa > 1:190629‑M2/40‑49 (MQ=255) cccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTaa < 1:5404343‑M2/10‑1 (MQ=255) cccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTaa < 1:3615286‑M2/10‑1 (MQ=255) tgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTaaaa > 1:109322‑M2/38‑49 (MQ=255) cgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAAc < 1:1555155‑M2/13‑1 (MQ=255) ggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACatat > 1:3972583‑M2/34‑50 (MQ=255) ggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACatat < 1:1558025‑M2/17‑1 (MQ=255) ggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACatat < 1:4528554‑M2/17‑1 (MQ=255) ggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACatat < 1:1236911‑M2/17‑1 (MQ=255) ggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACatat > 1:5007762‑M2/34‑50 (MQ=255) gacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACatat > 1:1767363‑M2/33‑49 (MQ=255) gacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATc < 1:2984348‑M2/18‑1 (MQ=255) acggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCa < 1:4607750‑M2/19‑1 (MQ=255) acggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCa > 1:4583874‑M2/32‑50 (MQ=255) acggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCa < 1:3164633‑M2/19‑1 (MQ=255) acggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCa < 1:1842561‑M2/19‑1 (MQ=255) acggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCa > 1:6245086‑M2/32‑50 (MQ=255) cggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCAt > 1:2269662‑M2/31‑50 (MQ=255) ggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCAt > 1:892409‑M2/30‑49 (MQ=255) gtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGa < 1:1591701‑M2/22‑1 (MQ=255) tgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGa > 1:2603528‑M2/28‑49 (MQ=255) gtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGaaa > 1:1652365‑M2/27‑50 (MQ=255) gtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGaaa > 1:172020‑M2/27‑50 (MQ=255) aacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACt > 1:1562221‑M2/25‑50 (MQ=255) aacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACt > 1:5342511‑M2/25‑50 (MQ=255) acaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACt < 1:3966798‑M2/26‑1 (MQ=255) acaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACt < 1:1560364‑M2/26‑1 (MQ=255) caatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTgg > 1:6841243‑M2/23‑50 (MQ=255) aatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTggg > 1:946267‑M2/22‑50 (MQ=255) atgcattccggcctgcagtgTTCGCTTTAACACATATCCTGAAACTggg > 1:1116134‑M2/21‑49 (MQ=255) atgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTggg > 1:4875826‑M2/21‑49 (MQ=255) atgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTggg > 1:737457‑M2/21‑49 (MQ=255) atgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTggg > 1:3020535‑M2/21‑49 (MQ=255) atgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGt < 1:5676450‑M2/30‑1 (MQ=255) cattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTAt < 1:3799032‑M2/32‑1 (MQ=255) cattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTAt < 1:6709103‑M2/32‑1 (MQ=255) cattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTAt < 1:3457718‑M2/32‑1 (MQ=255) cattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATg < 1:262001‑M2/33‑1 (MQ=255) ttccggcatgcagtgTTCGATTTAAAACATATCATGAAACTGGGTATGtt < 1:324728‑M2/35‑1 (MQ=255) tccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGttt > 1:3652357‑M2/15‑50 (MQ=255) ccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGtttt > 1:2419475‑M2/14‑50 (MQ=255) cggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGtttt < 1:6887929‑M2/37‑1 (MQ=255) cggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGtttt < 1:6989816‑M2/37‑1 (MQ=255) cggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGtttt < 1:5074565‑M2/37‑1 (MQ=255) cggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTg > 1:934261‑M2/13‑50 (MQ=255) ggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGt > 1:896202‑M2/12‑50 (MQ=255) gcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTc < 1:6571731‑M2/40‑1 (MQ=255) cctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTct < 1:733034‑M2/41‑1 (MQ=255) ctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctg > 1:505363‑M2/9‑50 (MQ=255) ctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctg > 1:1670854‑M2/9‑50 (MQ=255) cagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcct < 1:1679751‑M2/45‑1 (MQ=255) cagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcct > 1:2587999‑M2/6‑50 (MQ=255) agtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcctg > 1:2326757‑M2/5‑50 (MQ=255) agtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcctg > 1:190637‑M2/5‑50 (MQ=255) agtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcctg > 1:5822723‑M2/5‑50 (MQ=255) agtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcctg > 1:3466785‑M2/5‑50 (MQ=255) tgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGct > 1:1688286‑M2/3‑50 (MQ=255) tgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGct > 1:1294889‑M2/3‑50 (MQ=255) ttCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGctct < 1:5222538/50‑1 (MQ=255) | CATTTACCGATATGCAGGGATTGTCGCTCTTCCAGCTCAGCAAATAATTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCTCT > NC_000913/1140940‑1141037 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |