BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	2,601,201	Δ13,595 bp		[hyfA]–focB	[hyfA], hyfB, hyfC, hyfD, hyfE, hyfF, hyfG, hyfH, hyfI, hyfJ, hyfR, focB

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2601201	2614795	13595	108 [0]	[0] 106	[hyfA]–focB	[hyfA],hyfB,hyfC,hyfD,hyfE,hyfF,hyfG,hyfH,hyfI,hyfJ,hyfR,focB

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2601200	0 (0.000)	104 (1.100)	65/98	0.0	100%	intergenic (+252/‑1)	bcp/hyfA	thiol peroxidase/hydrogenase 4 component A
*	?	NC_000913	2614796 =	0 (0.000)	104 (1.100)	65/98	0.0	100%	intergenic (+14/+24)	focB/yfgO	putative formate transporter/putative transporter YfgO

Only 100 of 106 total aligned reads displayed.

GTTATCGGGCTATTTATTTACGTCAGGAACCCTGAAAAATCAGCCCGGCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATCGG  >  NC_000913/2614748‑2614845

ttatgcaatatgaaatgcaatgtttcatatcattttcaaggagccgacc                                                   >  1:3249649‑M2/49‑49 (MQ=255)

 tatgcaatatgaaatgcaatgtttcatatcattttcaaggagccgaccg                                                  >  1:3242840‑M2/48‑49 (MQ=255)

 tatgcaatatgaaatgcaatgtttcatatcattttcaaggagccgaccg                                                  >  1:897864‑M2/48‑49 (MQ=255)

 tatgcaatatgaaatgcaatgtttcatatcattttcaaggagccgaccg                                                  >  1:1083123‑M2/48‑49 (MQ=255)

 tatgcaatatgaaatgcaatgtttcatatcattttcaaggagccgaccg                                                  >  1:6954751‑M2/48‑49 (MQ=255)

 tatgcaatatgaaatgcaatgtttcatatcattttcaaggagccgaccg                                                  >  1:4508785‑M2/48‑49 (MQ=255)

 tatgcaatatgaaatgcaatgtttcatatcattttcaaggagccgacc                                                   <  1:2004964‑M2/1‑1 (MQ=255)

 tatgcaatatgaaatgcaatgtttcatatcattttcaaggagccgacc                                                   <  1:5652034‑M2/1‑1 (MQ=255)

 tatgcaatatgaaatgcaatgtttcatatcattttcaaggagccgacc                                                   <  1:1684608‑M2/1‑1 (MQ=255)

  atgcaatatgaaatgcaatgtttcatatcattttcaaggagccgaccga                                                 >  1:3759586‑M2/47‑49 (MQ=255)

  atgcaatatgaaatgcaatgtttcatatcattttcaaggagccgaccga                                                 >  1:2600099‑M2/47‑49 (MQ=255)

  atgcaatatgaaatgcaatgtttcatatcattttcaaggagccgaccga                                                 <  1:6850270‑M2/3‑1 (MQ=255)

    gcaatatgaaatgcaatgtttcatatcattttcaaggagccgacCGaaa                                               >  1:2177188‑M2/45‑49 (MQ=255)

     caatatgaaatgcaatgtttcatatcattttcaaggagccgacCGaaa                                               >  1:6297068‑M2/44‑48 (MQ=255)

     caatatgaaatgcaatgtttcatatcattttcaaggagccgacCGaaa                                               >  1:349848‑M2/44‑48 (MQ=255)

     caatatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAAc                                              <  1:2424602‑M2/6‑1 (MQ=255)

     caatatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAAc                                              <  1:3958513‑M2/6‑1 (MQ=255)

      aatatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAg                                            >  1:2992514‑M2/43‑50 (MQ=255)

      aatatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAg                                            >  1:2053203‑M2/43‑50 (MQ=255)

       atatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGt                                           >  1:6070123‑M2/42‑50 (MQ=255)

       atatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGt                                           >  1:3553637‑M2/42‑50 (MQ=255)

       atatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGt                                           >  1:1373003‑M2/42‑50 (MQ=255)

        tatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGtt                                          >  1:921435‑M2/41‑50 (MQ=255)

        tatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGtt                                          <  1:3274749‑M2/10‑1 (MQ=255)

        tatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGtt                                          >  1:6945627‑M2/41‑50 (MQ=255)

         atgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtc                                         >  1:685291‑M2/40‑50 (MQ=255)

          tgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcg                                        >  1:4211478‑M2/39‑50 (MQ=255)

          tgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtc                                         <  1:511007‑M2/11‑1 (MQ=255)

            aaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgtc                                      >  1:941503‑M2/37‑50 (MQ=255)

            aaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgtc                                      <  1:1332791‑M2/14‑1 (MQ=255)

            aaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgtc                                      <  1:2734163‑M2/14‑1 (MQ=255)

             aatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgtcg                                     <  1:891710‑M2/15‑1 (MQ=255)

             aatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgtcg                                     <  1:1591332‑M2/15‑1 (MQ=255)

             aatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgtcg                                     <  1:915645‑M2/15‑1 (MQ=255)

              atgcaatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCgg                                    <  1:4974815‑M2/16‑1 (MQ=255)

              atgcaatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCgg                                    >  1:6690400‑M2/35‑50 (MQ=255)

              atgcaatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCgg                                    <  1:5892813‑M2/16‑1 (MQ=255)

               tgcaatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCggg                                   <  1:5069301‑M2/17‑1 (MQ=255)

                gcaatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGc                                  >  1:4157080‑M2/33‑50 (MQ=255)

                 caatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCt                                 <  1:4922779‑M2/19‑1 (MQ=255)

                 caatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCt                                 <  1:1548969‑M2/19‑1 (MQ=255)

                  aatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCt                                 >  1:1742661‑M2/31‑49 (MQ=255)

                  aatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCt                                 >  1:6515454‑M2/31‑49 (MQ=255)

                  aatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCt                                 >  1:3076740‑M2/31‑49 (MQ=255)

                  aatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTg                                <  1:5101642‑M2/20‑1 (MQ=255)

                  aatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTg                                <  1:6503581‑M2/20‑1 (MQ=255)

                    tgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTg                                >  1:3143380‑M2/29‑48 (MQ=255)

                    tgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTg                                >  1:1663172‑M2/29‑48 (MQ=255)

                    tgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGaa                              <  1:2618989‑M2/22‑1 (MQ=255)

                    tgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGaa                              <  1:2826589‑M2/22‑1 (MQ=255)

                     gtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTg                                >  1:6185602‑M2/28‑47 (MQ=255)

                      tttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTg                                >  1:5299864‑M2/27‑46 (MQ=255)

                      tttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAg                             <  1:6367409‑M2/23‑1 (MQ=255)

                      tttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAg                             <  1:4277885‑M2/23‑1 (MQ=255)

                       ttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGat                           >  1:4971189‑M2/26‑50 (MQ=255)

                        tcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGat                           >  1:19695‑M2/25‑49 (MQ=255)

                        tcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGat                           >  1:1505852‑M2/25‑49 (MQ=255)

                        tcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGat                           <  1:1514341‑M2/25‑1 (MQ=255)

                        tcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGat                           >  1:3168320‑M2/25‑49 (MQ=255)

                        tcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGat                           <  1:318585‑M2/25‑1 (MQ=255)

                         catatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGatt                          <  1:378171‑M2/26‑1 (MQ=255)

                          atatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGattat                        >  1:1234586‑M2/23‑50 (MQ=255)

                          atatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGattat                        >  1:6909757‑M2/23‑50 (MQ=255)

                          atatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGattat                        <  1:1780094‑M2/28‑1 (MQ=255)

                          atatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGattat                        >  1:5802243‑M2/23‑50 (MQ=255)

                            atcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTc                      >  1:3907169‑M2/21‑50 (MQ=255)

                             tcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTc                      <  1:2811817‑M2/30‑1 (MQ=255)

                             tcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTc                      <  1:5995642‑M2/30‑1 (MQ=255)

                             tcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCt                     <  1:690846‑M2/31‑1 (MQ=255)

                              cattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCtt                    >  1:2262994‑M2/19‑50 (MQ=255)

                               attttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTg                   >  1:5960318‑M2/18‑50 (MQ=255)

                                ttttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTgc                  >  1:6444284‑M2/17‑50 (MQ=255)

                                ttttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTgc                  <  1:147041‑M2/34‑1 (MQ=255)

                                ttttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTgc                  <  1:2021272‑M2/34‑1 (MQ=255)

                                  ttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTgcgc                >  1:3919867‑M2/15‑50 (MQ=255)

                                  ttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTgcgc                >  1:1144709‑M2/15‑50 (MQ=255)

                                  ttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTgcg                 <  1:6723878‑M2/35‑1 (MQ=255)

                                   tcaaggagccgacCGAAGCAGTTCGTCGGGCTGAAGATTATTCTTgcgc                <  1:5287343‑M2/36‑1 (MQ=255)

                                   tcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTgcgc                >  1:117155‑M2/14‑49 (MQ=255)

                                    caaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGcgcg               <  1:6234733‑M2/37‑1 (MQ=255)

                                    caaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGcgcg               <  1:3810960‑M2/37‑1 (MQ=255)

                                    caaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGa              >  1:3203850‑M2/13‑50 (MQ=255)

                                     aaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGAt             >  1:6643424‑M2/12‑50 (MQ=255)

                                     aaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGAt             <  1:4724775‑M2/39‑1 (MQ=255)

                                      aggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGAtt            <  1:5336562‑M2/40‑1 (MQ=255)

                                       ggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGAttt           <  1:6214220‑M2/41‑1 (MQ=255)

                                       ggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGAttt           <  1:3054898‑M2/41‑1 (MQ=255)

                                       ggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGAttt           <  1:6776061‑M2/41‑1 (MQ=255)

                                         agccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGc         >  1:4848145‑M2/8‑50 (MQ=255)

                                         agccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGc         >  1:4647520‑M2/8‑50 (MQ=255)

                                         agccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGc         >  1:2366925‑M2/8‑50 (MQ=255)

                                          gccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGcc        <  1:2518366‑M2/44‑1 (MQ=255)

                                           ccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGccc       <  1:6007382‑M2/45‑1 (MQ=255)

                                             gacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCAt     <  1:3070108‑M2/47‑1 (MQ=255)

                                              acCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATc    >  1:6704611‑M2/3‑50 (MQ=255)

                                              acCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATc    <  1:5631971‑M2/48‑1 (MQ=255)

                                               cCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATCg   >  1:567593‑M2/2‑50 (MQ=255)

                                               cCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATCg   <  1:1558577‑M2/49‑1 (MQ=255)

                                                cGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATCgg  <  1:42614/50‑1 (MQ=255)

                                                cGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATCgg  <  1:3198875/50‑1 (MQ=255)

GTTATCGGGCTATTTATTTACGTCAGGAACCCTGAAAAATCAGCCCGGCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATCGG  >  NC_000913/2614748‑2614845

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.