| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 765,208 | Δ5,405 bp | [mngR]–mngB | [mngR], mngA, mngB | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 765208 | 770612 | 5405 | 121 [0] | [0] 112 | [mngR]–mngB | [mngR],mngA,mngB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 765207 | 0 (0.000) | 108 (0.740) | 56/96 | 0.1 | 100% | coding (669/723 nt) | mngR | DNA‑binding transcriptional repressor MngR |
| ? | NC_000913 | 770613 = | 0 (0.000) | intergenic (+2/‑845) | mngB/cydA | alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I | |||||
Only 100 of 121 total aligned reads displayed.
CGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/765157‑765207‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAGG > NC_000913/770613‑770661 CGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 2:429539/1‑50 GCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAT < 2:4493059/50‑1 GCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAT < 2:4430664/50‑1 GCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA < 2:4854246/49‑1 GCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:1768095/1‑49 GCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA < 1:5444666/49‑1 GCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:3989619/1‑49 GCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:3013799/1‑49 CGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 2:4857490/1‑48 CGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:4149425/1‑48 GATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAG > 1:1070700/1‑50 GATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAG > 1:981878/1‑50 GATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAG > 1:721284/1‑50 GATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAG < 1:3317254/50‑1 GATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAG > 1:1355506/1‑50 GATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAG > 1:1989285/1‑50 ATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAG > 2:5042783/1‑49 TGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCA < 2:1465557/50‑1 ATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAAT > 2:5279415/1‑50 ATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAAT < 1:1370924/50‑1 ATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAAT < 1:2241771/50‑1 ATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAAT < 2:3237496/50‑1 ATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAA < 2:5583629/49‑1 TTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATC < 2:3405964/50‑1 TTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATC > 1:3859803/1‑49 TTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCA < 1:1042298/49‑1 TTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCA < 1:4296491/49‑1 TCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAA < 1:533273/49‑1 TCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAA < 2:4598607/49‑1 TCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAA < 2:3095538/49‑1 CGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAAC > 2:2473096/1‑50 CGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAA < 2:4068465/49‑1 CGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAA < 1:64493/49‑1 GCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACC < 1:4138611/50‑1 GCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACC < 2:3302421/50‑1 GCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACC > 2:3314016/1‑50 GCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAAC < 2:194884/49‑1 CTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCG < 1:3483599/50‑1 CGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAG > 2:590297/1‑50 GCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGC < 1:2214684/50‑1 CTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCC < 1:333342/50‑1 TATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCA > 2:2691660/1‑50 TATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCA > 1:2698253/1‑50 TATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCA > 1:2935603/1‑50 TATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCA > 2:591073/1‑50 ATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCA > 1:4434519/1‑49 TCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACA < 1:4217378/50‑1 TCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCA < 2:2861277/48‑1 CAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACA > 2:1326011/1‑49 AGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATA < 2:4830231/50‑1 AGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATA > 2:1274180/1‑50 AGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATA > 1:3815818/1‑50 GGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATAT < 1:2387114/50‑1 GGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATAT < 2:2113649/50‑1 GGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATG > 1:5675449/1‑50 GTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGC < 2:1443385/50‑1 GTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGC > 1:3897181/1‑50 aaTTATAGTCATCTGTATTATAGCAATCAAACCGAAGCCACATATGCGCG > 2:4326191/3‑50 aaTTATAGTCATCGGTATTATAGCAATCAAACCGAAGCTACATATGCGC < 1:4416092/47‑1 aaTTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCG < 1:1258844/48‑1 aaTTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCG > 1:47527/3‑50 aaTTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCG < 1:4963350/48‑1 aaTTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGC < 2:2222475/47‑1 aTTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGG > 1:3477697/2‑50 aTTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGG < 2:2803766/49‑1 TATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGC > 2:3590556/1‑49 ATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCC < 1:589576/49‑1 ATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCC < 1:1524989/49‑1 TAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCA < 1:4583244/49‑1 TAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCA < 2:3273896/49‑1 TAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGC > 2:1314893/1‑47 AGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGC > 1:2583774/1‑46 TCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATT > 1:2247379/1‑50 CATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTG > 2:1628789/1‑50 ATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGT > 2:879563/1‑50 ATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGT > 1:5452684/1‑50 TCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTT < 1:3886469/50‑1 CGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTT > 2:1840183/1‑49 GGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGA < 1:834169/50‑1 GGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGA < 2:862377/50‑1 GGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGA > 1:4741408/1‑50 GGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGA < 1:1792693/50‑1 GGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGA < 2:2942966/50‑1 GGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGA > 2:4791379/1‑50 GGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGA > 1:1600875/1‑50 GTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGA > 2:5500126/1‑49 TATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGAC > 1:1607176/1‑49 TATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGAC > 2:4018828/1‑49 TATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGAC > 2:5432869/1‑49 TATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGAC > 2:2936722/1‑49 TTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAA < 2:1525470/50‑1 TTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAA < 2:4831279/50‑1 TTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAA < 1:414556/50‑1 TTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAA < 1:968746/49‑1 TTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAA < 2:1368511/49‑1 TTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAA < 2:2916386/49‑1 TATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAG > 1:1944724/1‑50 ATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAGG > 2:1717071/1‑50 ATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAG < 1:635455/49‑1 ATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAG < 2:2193593/49‑1 CGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/765157‑765207‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAGG > NC_000913/770613‑770661 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |