BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	765,208	Δ5,405 bp		[mngR]–mngB	[mngR], mngA, mngB

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	765208	770612	5405	121 [0]	[0] 112	[mngR]–mngB	[mngR],mngA,mngB

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 765207	0 (0.000)	108 (0.740)	56/96	0.1	100%	coding (669/723 nt)	mngR	DNA‑binding transcriptional repressor MngR
*	?	NC_000913	770613 =	0 (0.000)	108 (0.740)	56/96	0.1	100%	intergenic (+2/‑845)	mngB/cydA	alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I

Only 100 of 112 total aligned reads displayed.

CCTTTTTTACCCGGCCAGTCACGGACGTTCAGTTACCGGCTTGCCTGAATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAGGG  >  NC_000913/770564‑770662

gcgatgattttcgctgcgctatcagggtaaattatagtcatcggtattat                                                   <  2:4430664‑M2/1‑1 (MQ=255)

 cgatgattttcgctgcgctatcagggtaaattatagtcatcggtattata                                                  <  2:2740477‑M2/2‑1 (MQ=255)

  gatgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg                                                 >  1:1070700‑M2/48‑50 (MQ=255)

  gatgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg                                                 >  1:981878‑M2/48‑50 (MQ=255)

  gatgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg                                                 >  1:721284‑M2/48‑50 (MQ=255)

  gatgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg                                                 <  1:3317254‑M2/3‑1 (MQ=255)

  gatgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg                                                 >  1:1989285‑M2/48‑50 (MQ=255)

  gatgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg                                                 >  1:1355506‑M2/48‑50 (MQ=255)

  gatgattttcgctgcgctatcagggtaaattatagtcagcggtattaTAg                                                 <  2:2065693‑M2/3‑1 (MQ=255)

   atgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg                                                 >  2:5042783‑M2/47‑49 (MQ=255)

   atgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGc                                                <  1:4885025‑M2/4‑1 (MQ=255)

    tgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCa                                               <  2:1465557‑M2/5‑1 (MQ=255)

     gattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCaa                                              >  1:3555890‑M2/45‑50 (MQ=255)

      attttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCaa                                              <  2:5583629‑M2/6‑1 (MQ=255)

      attttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAAt                                             <  1:2241771‑M2/7‑1 (MQ=255)

      attttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAAt                                             <  1:1370924‑M2/7‑1 (MQ=255)

      attttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAAt                                             <  2:3237496‑M2/7‑1 (MQ=255)

       ttttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATc                                            <  2:3405964‑M2/8‑1 (MQ=255)

        tttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATc                                            >  1:3859803‑M2/42‑49 (MQ=255)

         ttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCa                                           <  1:4296491‑M2/9‑1 (MQ=255)

         ttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCa                                           <  1:1042298‑M2/9‑1 (MQ=255)

          tcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCaa                                          <  2:4598607‑M2/10‑1 (MQ=255)

          tcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCaa                                          <  1:533273‑M2/10‑1 (MQ=255)

          tcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCaa                                          <  2:3095538‑M2/10‑1 (MQ=255)

           cgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCaaa                                         <  1:64493‑M2/11‑1 (MQ=255)

           cgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCaaa                                         <  2:4068465‑M2/11‑1 (MQ=255)

           cgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAc                                        >  2:2473096‑M2/39‑50 (MQ=255)

            gctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAcc                                       <  2:3388132‑M2/13‑1 (MQ=255)

            gctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAcc                                       >  2:3314016‑M2/38‑50 (MQ=255)

            gctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAcc                                       <  2:5690873‑M2/13‑1 (MQ=255)

            gctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAcc                                       <  1:4138611‑M2/13‑1 (MQ=255)

            gctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAc                                        <  2:194884‑M2/12‑1 (MQ=255)

             ctgcgctatcaggttaaattatagtcatcggtattaTAGCAATCAAAcc                                       >  2:2984072‑M2/37‑49 (MQ=255)

             ctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCg                                      <  1:3483599‑M2/14‑1 (MQ=255)

                cgctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAg                                   >  2:590297‑M2/34‑50 (MQ=255)

                 gctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGc                                  <  1:2214684‑M2/18‑1 (MQ=255)

                  ctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGcc                                 <  1:333342‑M2/19‑1 (MQ=255)

                  ctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGcc                                 <  2:4947450‑M2/19‑1 (MQ=255)

                   tatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCca                                >  2:2691660‑M2/31‑50 (MQ=255)

                   tatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCca                                >  2:591073‑M2/31‑50 (MQ=255)

                   tatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCca                                >  1:2935603‑M2/31‑50 (MQ=255)

                   tatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCca                                >  1:2698253‑M2/31‑50 (MQ=255)

                     tcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCcaca                              <  1:4217378‑M2/22‑1 (MQ=255)

                     tcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCca                                <  2:2861277‑M2/20‑1 (MQ=255)

                      cagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCcaca                              >  2:1326011‑M2/28‑49 (MQ=255)

                       agggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACata                            <  2:4830231‑M2/24‑1 (MQ=255)

                        gggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACatat                           <  2:2113649‑M2/25‑1 (MQ=255)

                        gggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACatat                           <  1:2387114‑M2/25‑1 (MQ=255)

                        gggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACatat                           <  2:4764364‑M2/25‑1 (MQ=255)

                         ggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATg                          >  2:1543166‑M2/25‑50 (MQ=255)

                          gtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATgc                         >  1:2386294‑M2/24‑50 (MQ=255)

                          gtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATgc                         <  2:1443385‑M2/27‑1 (MQ=255)

                          gtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATgc                         >  1:3897181‑M2/24‑50 (MQ=255)

                             aattatagtcatctgtattaTAGCAATCAAACCGAAGCCACATATGcgcg                      >  2:4326191‑M2/21‑50 (MQ=255)

                             aattatagtcatcggtattaTAGCAATCAAACCGAAGCTACATATgcgc                       <  1:4416092‑M2/29‑1 (MQ=255)

                             aattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATgcgc                       <  2:2222475‑M2/29‑1 (MQ=255)

                             aattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGcgcg                      <  1:1258844‑M2/30‑1 (MQ=255)

                             aattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGcgcg                      <  1:4963350‑M2/30‑1 (MQ=255)

                             aattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGcgcg                      >  1:47527‑M2/21‑50 (MQ=255)

                              attatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCgg                     >  1:3477697‑M2/20‑50 (MQ=255)

                                tatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc                    >  2:3590556‑M2/18‑49 (MQ=255)

                                 atagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGcc                   <  1:589576‑M2/33‑1 (MQ=255)

                                 atagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGcc                   <  1:1524989‑M2/33‑1 (MQ=255)

                                  tagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc                    >  2:1314893‑M2/16‑47 (MQ=255)

                                  tagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCa                  <  1:4583244‑M2/34‑1 (MQ=255)

                                  tagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCa                  <  2:3273896‑M2/34‑1 (MQ=255)

                                     tcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAtt              >  1:2247379‑M2/13‑50 (MQ=255)

                                     tcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAtt              <  1:317907‑M2/38‑1 (MQ=255)

                                     tcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAtt              <  2:4135047‑M2/38‑1 (MQ=255)

                                     tcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAtt              >  1:5535624‑M2/13‑50 (MQ=255)

                                      catcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttg             >  2:1628789‑M2/12‑50 (MQ=255)

                                       atcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgt            >  2:879563‑M2/11‑50 (MQ=255)

                                       atcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgt            <  1:1924076‑M2/40‑1 (MQ=255)

                                       atcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgt            >  1:5452684‑M2/11‑50 (MQ=255)

                                        tcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgtt           <  1:3886469‑M2/41‑1 (MQ=255)

                                          ggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGa         <  1:834169‑M2/43‑1 (MQ=255)

                                          ggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGa         <  2:862377‑M2/43‑1 (MQ=255)

                                          ggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGa         >  1:1600875‑M2/8‑50 (MQ=255)

                                          ggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGa         >  1:4741408‑M2/8‑50 (MQ=255)

                                          ggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGa         <  2:2942966‑M2/43‑1 (MQ=255)

                                          ggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGa         >  2:4791379‑M2/8‑50 (MQ=255)

                                           gtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGa         >  2:5500126‑M2/7‑49 (MQ=255)

                                            tattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGAc        >  1:1607176‑M2/6‑49 (MQ=255)

                                            tattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGAc        >  2:4018828‑M2/6‑49 (MQ=255)

                                            tattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGAc        >  2:2936722‑M2/6‑49 (MQ=255)

                                            tattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGAc        >  1:4298844‑M2/6‑49 (MQ=255)

                                            tattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGAc        >  2:5432869‑M2/6‑49 (MQ=255)

                                              ttaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACaaa     <  1:731605‑M2/47‑1 (MQ=255)

                                              ttaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACaaa     <  2:1525470‑M2/47‑1 (MQ=255)

                                              ttaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACaaa     <  2:4831279‑M2/47‑1 (MQ=255)

                                              ttaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACaaa     <  1:414556‑M2/47‑1 (MQ=255)

                                              ttaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACaa      <  2:2916386‑M2/46‑1 (MQ=255)

                                              ttaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACaa      <  2:1368511‑M2/46‑1 (MQ=255)

                                              ttaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACaa      <  1:968746‑M2/46‑1 (MQ=255)

                                               taTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAg    >  1:1944724‑M2/3‑50 (MQ=255)

                                               taTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAg    >  1:1404030‑M2/3‑50 (MQ=255)

                                                aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAgg   >  2:1717071‑M2/2‑50 (MQ=255)

                                                aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAg    <  1:635455‑M2/48‑1 (MQ=255)

                                                aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAg    <  2:2193593‑M2/48‑1 (MQ=255)

                                                 tAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAggg  <  2:4654228/50‑1 (MQ=255)

CCTTTTTTACCCGGCCAGTCACGGACGTTCAGTTACCGGCTTGCCTGAATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAGGG  >  NC_000913/770564‑770662

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`