| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 997,868 | Δ6,818 bp | [elfA]–ycbF | [elfA], elfD, elfC, elfG, ycbU, ycbV, ycbF | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 997868 | 1004685 | 6818 | 140 [0] | [0] 142 | [elfA]–ycbF | [elfA],elfD,elfC,elfG,ycbU,ycbV,ycbF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 997867 | 0 (0.000) | 136 (0.910) | 70/98 | 0.0 | 100% | intergenic (‑355/‑1) | ssuE/elfA | NADPH‑dependent FMN reductase/putative laminin‑binding fimbrial subunit |
| ? | NC_000913 | 1004686 = | 0 (0.000) | intergenic (+29/‑82) | ycbF/pyrD | putative fimbrial chaperone YcbF/dihydroorotate dehydrogenase, type 2 | |||||
Only 100 of 136 total aligned reads displayed.
TGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/997819‑997867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC > NC_000913/1004686‑1004734 TGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGT < 1:2615596/50‑1TGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGT < 2:5165577/50‑1 GTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTT > 1:1559832/1‑50 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTT > 2:2358919/1‑50 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTT > 2:1396935/1‑50 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTT < 1:3243531/50‑1 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTT > 2:4482913/1‑50 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTT < 1:2893747/50‑1 CATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTG > 2:3256191/1‑50 CATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTG > 2:1142421/1‑50 CATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTG > 2:4728057/1‑50 ATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGC < 1:1518703/50‑1 ATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGC < 1:3004224/50‑1 ATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTG < 2:1509808/49‑1 TTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCC > 1:5644149/1‑50 TTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCC > 1:3554672/1‑50 TTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 2:2828839/1‑50 TTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 2:3808486/1‑50 TTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 1:1918081/1‑50 TAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 2:4666292/1‑49 AAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 1:5447393/1‑48 AAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 1:1985600/1‑48 AAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 1:1837010/1‑48 AAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAG > 2:66663/1‑50 AAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAG > 2:4263559/1‑50 AAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAG < 1:3494316/50‑1 AAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCA < 2:1222648/49‑1 AGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGG < 2:4836021/50‑1 GGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGT > 2:2374458/1‑50 GCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTC < 1:5492070/50‑1 ATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAA > 1:226226/1‑50 ATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAA > 1:2142772/1‑50 TTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAAT > 1:2007952/1‑50 TATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATT > 2:540651/1‑50 ATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTC > 2:1858227/1‑50 CATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCC > 2:1641341/1‑50 CATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCC > 2:1253315/1‑50 ATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCg < 1:1688553/50‑2 ATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCT < 2:3280408/50‑1 ATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCT > 1:4192095/1‑50 ATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCT > 1:929256/1‑50 ATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCT < 2:5000729/50‑1 ATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCC < 1:3034731/49‑1 TATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTT > 2:2926774/1‑50 ATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTT > 1:2494017/1‑50 TTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTT < 2:3307405/50‑1 TTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTT < 2:3716549/50‑1 TTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTG > 1:1461210/1‑50 TTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTG > 1:4728818/1‑50 ACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGT > 2:1500247/1‑50 ACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGT > 2:5304704/1‑50 CGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGT < 2:4414967/49‑1 CGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGT < 1:1496208/49‑1 GAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC > 2:2878933/1‑50 GAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC > 1:484112/1‑50 AAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCG < 2:5574628/50‑1 AAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC > 2:5345175/1‑49 AAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC > 2:5408276/1‑49 AAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC > 1:1074177/1‑49 AAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC > 1:4950377/1‑49 AGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCG > 1:2032353/1‑49 GAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAA < 1:3512777/50‑1 GAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAA > 1:2102392/1‑50 GAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAA > 1:5563049/1‑50 GAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAA > 2:2236787/1‑50 GAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAA > 1:1039680/1‑50 AGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAAC > 2:789525/1‑50 GATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACT < 2:4108105/50‑1 ATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTC > 2:930970/1‑50 TCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCG > 1:2131680/1‑50 TCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCG < 1:4422411/50‑1 TCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCG < 2:3397959/50‑1 AGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCA > 2:932274/1‑50 AGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCA > 1:2726812/1‑50 AGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGC < 1:2334361/49‑1 GGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCAC < 1:5148082/50‑1 GGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCAC < 1:3917985/50‑1 GGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCAC < 1:3119011/50‑1 GGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCA > 1:324047/1‑49 GATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACA > 1:2418917/1‑50 ATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACAT < 2:1355398/50‑1 ATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACA > 2:5245715/1‑49 ATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACA > 1:1215210/1‑49 GATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAA > 2:1600428/1‑50 ATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAAT < 1:2471458/50‑1 ATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAAT < 1:2055056/50‑1 ATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAA < 2:80918/49‑1 ATAACGTTTGCCACATGTCAATTCCCTTGTGGTCCGAACTCGCACATAA < 1:4098/49‑1 TAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATA < 2:1945757/50‑1 TAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATA < 1:5374135/50‑1 AACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATAC > 2:5614795/1‑50 ACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACG > 1:3881237/1‑50 ACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACG < 2:1321089/50‑1 ACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACG > 2:5101837/1‑50 ACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATAC < 1:2670916/49‑1 CGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGC < 1:5077320/50‑1 CGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGC > 2:1006434/1‑50 GTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC > 1:4662991/1‑50 GTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC > 2:812168/1‑50 GTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC < 2:3470001/50‑1 TGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/997819‑997867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC > NC_000913/1004686‑1004734 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |