| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 997,868 | Δ6,818 bp | [elfA]–ycbF | [elfA], elfD, elfC, elfG, ycbU, ycbV, ycbF | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 997868 | 1004685 | 6818 | 140 [0] | [0] 142 | [elfA]–ycbF | [elfA],elfD,elfC,elfG,ycbU,ycbV,ycbF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 997867 | 0 (0.000) | 136 (0.910) | 70/98 | 0.0 | 100% | intergenic (‑355/‑1) | ssuE/elfA | NADPH‑dependent FMN reductase/putative laminin‑binding fimbrial subunit |
| ? | NC_000913 | 1004686 = | 0 (0.000) | intergenic (+29/‑82) | ycbF/pyrD | putative fimbrial chaperone YcbF/dihydroorotate dehydrogenase, type 2 | |||||
Only 100 of 142 total aligned reads displayed.
AAGGAGCAAAATCTGCCCTGAAACAGGTTCGGAAAACGTTTGCGTTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCC > NC_000913/1004637‑1004735 | tgtcatttaaaggcattatcatatttacgaagagatcaggatgataacgt < 2:5165577‑M2/1‑1 (MQ=255)tgtcatttaaaggcattatcatatttacgaagagatcaggatgataacgt < 1:2615596‑M2/1‑1 (MQ=255) gtcatttaaaggcattatcatatttacgaagagatcaggatgataacgtt > 1:1559832‑M2/49‑50 (MQ=255) tcatttaaaggcattatcatatttacgaagagatcaggatgataacgttt < 1:4165805‑M2/3‑1 (MQ=255) tcatttaaaggcattatcatatttacgaagagatcaggatgataacgttt > 2:1396935‑M2/48‑50 (MQ=255) tcatttaaaggcattatcatatttacgaagagatcaggatgataacgttt < 1:2893747‑M2/3‑1 (MQ=255) catttaaaggcattatcatatttacgaagagatcaggatgataacgTTTg > 2:4728057‑M2/47‑50 (MQ=255) catttaaaggcattatcatatttacgaagagatcaggatgataacgTTTg > 2:1142421‑M2/47‑50 (MQ=255) atttaaaggcattatcatatttacgaagagatcaggatgataacgTTTg < 2:1509808‑M2/4‑1 (MQ=255) atttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGc < 1:3004224‑M2/5‑1 (MQ=255) tttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGcc < 2:4551418‑M2/6‑1 (MQ=255) tttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGcc > 1:3554672‑M2/45‑50 (MQ=255) tttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGcc > 2:5000369‑M2/45‑50 (MQ=255) tttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGcc > 1:617152‑M2/45‑50 (MQ=255) ttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCg > 2:3808486‑M2/44‑50 (MQ=255) ttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCg > 1:1918081‑M2/44‑50 (MQ=255) taaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCg > 2:4666292‑M2/43‑49 (MQ=255) aaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCg > 1:3465692‑M2/42‑48 (MQ=255) aaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCg > 2:2024893‑M2/42‑48 (MQ=255) aaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCg > 1:5447393‑M2/42‑48 (MQ=255) aaggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAg > 2:66663‑M2/41‑50 (MQ=255) aaggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAg < 1:3494316‑M2/10‑1 (MQ=255) aaggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAg > 2:4263559‑M2/41‑50 (MQ=255) ggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGt > 2:2374458‑M2/39‑50 (MQ=255) attatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCaa > 1:2142772‑M2/36‑50 (MQ=255) ttatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAt > 2:1162466‑M2/35‑50 (MQ=255) ttatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAt > 1:2007952‑M2/35‑50 (MQ=255) tatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAtt > 1:5220494‑M2/34‑50 (MQ=255) atcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTc > 1:2057883‑M2/33‑50 (MQ=255) catatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTccc > 2:1253315‑M2/31‑50 (MQ=255) catatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTccc > 2:1641341‑M2/31‑50 (MQ=255) atatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATtcccg < 1:1688553‑M2/21‑2 (MQ=255) atatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTccc < 1:3034731‑M2/20‑1 (MQ=255) atatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCt > 1:2453238‑M2/30‑50 (MQ=255) atatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCt > 1:2167629‑M2/30‑50 (MQ=255) atatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCt < 2:5000729‑M2/21‑1 (MQ=255) atatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCt < 2:3280408‑M2/21‑1 (MQ=255) tatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCtt > 2:2926774‑M2/29‑50 (MQ=255) tatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCtt < 1:3567955‑M2/22‑1 (MQ=255) tatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCtt < 2:5517524‑M2/22‑1 (MQ=255) atttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCttt > 1:2494017‑M2/28‑50 (MQ=255) tttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCtttt < 2:3224005‑M2/24‑1 (MQ=255) tttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCtttt < 2:3307405‑M2/24‑1 (MQ=255) tttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCtttt < 1:1849037‑M2/24‑1 (MQ=255) tttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCtttt < 2:3716549‑M2/24‑1 (MQ=255) ttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTg > 1:4728818‑M2/26‑50 (MQ=255) ttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTg > 1:1461210‑M2/26‑50 (MQ=255) ttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTg > 2:737713‑M2/26‑50 (MQ=255) cgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGt < 2:4414967‑M2/27‑1 (MQ=255) cgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGt < 1:1496208‑M2/27‑1 (MQ=255) cgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTc < 1:5503182‑M2/28‑1 (MQ=255) cgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTc > 2:5243350‑M2/23‑50 (MQ=255) gaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc > 2:2878933‑M2/22‑50 (MQ=255) gaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc > 1:484112‑M2/22‑50 (MQ=255) aagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc > 1:1074177‑M2/21‑49 (MQ=255) aagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc > 2:5345175‑M2/21‑49 (MQ=255) aagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc > 1:4950377‑M2/21‑49 (MQ=255) aagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc > 2:5408276‑M2/21‑49 (MQ=255) aagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCg < 1:2014855‑M2/30‑1 (MQ=255) agagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGa < 2:3617077‑M2/31‑1 (MQ=255) gagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGaa > 1:2102392‑M2/19‑50 (MQ=255) gagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGaa > 1:1039680‑M2/19‑50 (MQ=255) gagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGaa > 2:2236787‑M2/19‑50 (MQ=255) gagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGaa > 1:5563049‑M2/19‑50 (MQ=255) gatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACt < 2:4108105‑M2/34‑1 (MQ=255) atcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTc > 2:930970‑M2/16‑50 (MQ=255) tcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCg < 2:3397959‑M2/36‑1 (MQ=255) tcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCg < 1:4422411‑M2/36‑1 (MQ=255) aggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGca > 2:932274‑M2/13‑50 (MQ=255) aggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGca > 1:2726812‑M2/13‑50 (MQ=255) aggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGc < 1:2334361‑M2/37‑1 (MQ=255) ggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGcac < 1:3119011‑M2/39‑1 (MQ=255) ggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGca > 1:324047‑M2/12‑49 (MQ=255) gatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGcaca > 1:2418917‑M2/11‑50 (MQ=255) gatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGcaca > 2:5326803‑M2/11‑50 (MQ=255) atgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGcaca > 1:1215210‑M2/10‑49 (MQ=255) atgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGcaca > 2:5245715‑M2/10‑49 (MQ=255) atgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACat < 2:1355398‑M2/41‑1 (MQ=255) tgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACat > 2:1507790‑M2/9‑49 (MQ=255) gataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACataa > 2:1800281‑M2/8‑50 (MQ=255) gataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACataa > 2:264912‑M2/8‑50 (MQ=255) ataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACataat < 1:2055056‑M2/44‑1 (MQ=255) ataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACataa < 2:80918‑M2/43‑1 (MQ=255) ataacgTTTGCCACATGTCAATTCCCTTGTGGTCCGAACTCGCACataa < 1:4098‑M2/43‑1 (MQ=255) taacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACataata < 1:5374135‑M2/45‑1 (MQ=255) taacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACataata > 1:1533952‑M2/6‑50 (MQ=255) taacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACataata < 2:1945757‑M2/45‑1 (MQ=255) aacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATAc > 1:4520894‑M2/5‑50 (MQ=255) aacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATAc > 2:5614795‑M2/5‑50 (MQ=255) acgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATAc < 1:2670916‑M2/46‑1 (MQ=255) acgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACg > 1:3881237‑M2/4‑50 (MQ=255) acgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACg < 2:1321089‑M2/47‑1 (MQ=255) cgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGc < 1:5077320‑M2/48‑1 (MQ=255) cgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGc > 2:1006434‑M2/3‑50 (MQ=255) gTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGcc < 2:3470001‑M2/49‑1 (MQ=255) gTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGcc > 2:812168‑M2/2‑50 (MQ=255) tttGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGccc < 1:4213453/50‑1 (MQ=255) tttGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGccc < 1:711721/50‑1 (MQ=255) tttGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGccc < 2:3743055/50‑1 (MQ=255) tttGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGccc > 2:1429559/1‑50 (MQ=255) | AAGGAGCAAAATCTGCCCTGAAACAGGTTCGGAAAACGTTTGCGTTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCC > NC_000913/1004637‑1004735 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |