| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,962,566 | Δ16,764 bp | flhE–insA‑5 | 17 genes flhE, flhA, flhB, cheZ, cheY, cheB, cheR, tap, tar, cheW, cheA, motB, motA, flhC, flhD, insB‑5, insA‑5 |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1962566 | 1979329 | 16764 | 166 [0] | [0] 161 | flhE–insA‑5 | flhE,flhA,flhB,cheZ,cheY,cheB,cheR,tap,tar,cheW,cheA,motB,motA,flhC,flhD,insB‑5,insA‑5 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1962565 | 0 (0.000) | 157 (1.070) | 72/96 | 0.0 | 100% | intergenic (+105/+15) | yecT/flhE | protein YecT/flagellar protein |
| ? | NC_000913 | 1979330 = | 0 (0.000) | intergenic (‑115/‑423) | insA‑5/uspC | IS1 protein InsA/universal stress protein C | |||||
Only 100 of 166 total aligned reads displayed.
AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1962516‑1962565‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT > NC_000913/1979330‑1979378 AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT > 2:3484276/1‑50AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT > 2:3841643/1‑50AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT > 2:4185276/1‑50AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT < 1:2473172/50‑1AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT > 1:2203543/1‑50 AGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTC > 1:462694/1‑50 AGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTC > 1:14700/1‑50 GACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCG < 1:1138883/50‑1 GACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCG > 1:3814557/1‑50 CATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCT < 1:5180507/50‑1 CATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGC > 2:719197/1‑49 ATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTA > 1:5061351/1‑50 ATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTA > 1:5353579/1‑50 ATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTA > 2:263092/1‑50 ATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTA > 2:2887555/1‑50 TCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTAC < 1:2278553/50‑1 GAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGC > 1:2604740/1‑50 GAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGC < 1:1404353/50‑1 GAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGC > 2:1722707/1‑50 GAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGC < 1:4423804/50‑1 GAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGC < 2:2322399/50‑1 GAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACG < 1:2589051/49‑1 GAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACG < 1:2946819/49‑1 AGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCT < 1:374469/50‑1 AGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGC > 2:2072960/1‑49 GCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTA < 1:2247004/50‑1 CCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAG < 2:24837/50‑1 CTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGC < 2:3247385/50‑1 CTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGC < 2:4827188/50‑1 CTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAG > 1:4160105/1‑49 TTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGC > 1:1717498/1‑49 TTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGC > 2:1665562/1‑49 TTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGC > 1:4947866/1‑49 TTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGC > 2:3751413/1‑48 TTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGC > 2:2708774/1‑48 TTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAG > 2:4093662/1‑50 TTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAA < 1:1338771/49‑1 TTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAA < 2:2121245/49‑1 TTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCA < 2:4711359/48‑1 TTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAG > 2:2376911/1‑49 TTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAG < 2:5197991/49‑1 CACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCA > 1:4834878/1‑49 ACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAA < 2:3562921/49‑1 ACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAA < 1:758308/49‑1 CTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAA < 1:4461923/50‑1 CTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAA < 1:5122548/50‑1 CTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAA < 1:1774332/50‑1 CTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAA > 1:5363919/1‑49 TGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAA > 2:4431197/1‑50 TGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAA > 1:2109510/1‑50 GAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT > 1:3176162/1‑50 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT < 1:5643990/49‑1 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT > 2:223301/1‑49 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT < 2:4552406/49‑1 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT < 2:112325/49‑1 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT < 1:32486/49‑1 GTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATG > 1:2101039/1‑49 TTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGA > 2:4826184/1‑49 TATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAA > 2:5596951/1‑50 ATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAA < 1:896626/49‑1 ATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAA > 2:1240660/1‑49 ATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAA > 2:1805619/1‑49 ATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAA < 2:2027365/49‑1 TTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACA < 2:1549542/50‑1 TAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAG > 2:4591314/1‑50 AAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAG > 2:2570630/1‑49 AAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAG < 2:2633218/49‑1 AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGA < 1:3886332/50‑1 AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGG > 2:5702909/1‑49 AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGG < 1:2977846/49‑1 AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGG > 1:604318/1‑49 CATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAAT < 2:4985289/50‑1 ATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAAT > 1:3707954/1‑49 ATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAAT > 1:3396773/1‑49 TACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAA < 1:658250/50‑1 CTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAAT < 1:1552401/49‑1 CTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAAT < 1:1215073/49‑1 CGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCG > 1:1902955/1‑49 GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAA < 1:3090242/50‑1 GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGA < 1:4983476/49‑1 GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGA < 2:1952773/49‑1 GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCG < 2:542773/48‑1 GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCG < 2:4019443/48‑1 GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAT < 2:3947024/50‑1 GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAT > 2:1312589/1‑50 GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAT > 1:4961441/1‑50 GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAT > 1:2158764/1‑50 AGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATG < 1:2829925/50‑1 GCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGA > 2:76613/1‑50 GCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGA < 1:1017447/50‑1 CGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAT < 1:3499347/50‑1 CGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAT > 1:4812793/1‑50 CGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAT > 1:5002601/1‑50 GTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATG > 1:3640464/1‑50 GTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATG < 2:290987/50‑1 GTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATG > 1:4106853/1‑50 GTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATG < 1:5516266/50‑1 GTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATG > 1:5645259/1‑50 GTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATG < 1:840110/50‑1 TCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT > 1:4250359/1‑50 AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1962516‑1962565‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT > NC_000913/1979330‑1979378 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |