| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,962,566 | Δ16,764 bp | flhE–insA‑5 | 17 genes flhE, flhA, flhB, cheZ, cheY, cheB, cheR, tap, tar, cheW, cheA, motB, motA, flhC, flhD, insB‑5, insA‑5 |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1962566 | 1979329 | 16764 | 166 [0] | [0] 161 | flhE–insA‑5 | flhE,flhA,flhB,cheZ,cheY,cheB,cheR,tap,tar,cheW,cheA,motB,motA,flhC,flhD,insB‑5,insA‑5 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1962565 | 0 (0.000) | 157 (1.070) | 72/96 | 0.0 | 100% | intergenic (+105/+15) | yecT/flhE | protein YecT/flagellar protein |
| ? | NC_000913 | 1979330 = | 0 (0.000) | intergenic (‑115/‑423) | insA‑5/uspC | IS1 protein InsA/universal stress protein C | |||||
Only 100 of 166 total aligned reads displayed.
AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTAATTTTTTTGTCCTTCAGCGATAATTCACAATCACTTCATTACGTTGTA > NC_000913/1962516‑1962614 | aaGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT > 2:3484276‑M1/1‑50 (MQ=255)aaGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT > 2:3841643‑M1/1‑50 (MQ=255)aaGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT > 2:4185276‑M1/1‑50 (MQ=255)aaGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT < 1:2473172‑M1/50‑1 (MQ=255)aaGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT > 1:2203543‑M1/1‑50 (MQ=255) aGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTc > 1:462694‑M1/1‑49 (MQ=255) aGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTc > 1:14700‑M1/1‑49 (MQ=255) gACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcg < 1:1138883‑M1/50‑3 (MQ=255) gACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcg > 1:3814557‑M1/1‑48 (MQ=255) cATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgct < 1:5180507‑M1/50‑5 (MQ=255) cATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgc > 2:719197‑M1/1‑46 (MQ=255) aTCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgcta > 1:5061351‑M1/1‑45 (MQ=255) aTCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgcta > 1:5353579‑M1/1‑45 (MQ=255) aTCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgcta > 2:263092‑M1/1‑45 (MQ=255) aTCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgcta > 2:2887555‑M1/1‑45 (MQ=255) tCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctac < 1:2278553‑M1/50‑7 (MQ=255) gAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgc > 1:2604740‑M1/1‑42 (MQ=255) gAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgc < 1:1404353‑M1/50‑9 (MQ=255) gAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgc > 2:1722707‑M1/1‑42 (MQ=255) gAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgc < 1:4423804‑M1/50‑9 (MQ=255) gAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgc < 2:2322399‑M1/50‑9 (MQ=255) gAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacg < 1:2589051‑M1/49‑8 (MQ=255) gAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacg < 1:2946819‑M1/49‑8 (MQ=255) aGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgct < 1:374469‑M1/50‑10 (MQ=255) aGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgc > 2:2072960‑M1/1‑41 (MQ=255) gCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgcta < 1:2247004‑M1/50‑11 (MQ=255) ccTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctag < 2:24837‑M1/50‑12 (MQ=255) cTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagc < 2:3247385‑M1/50‑13 (MQ=255) cTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagc < 2:4827188‑M1/50‑13 (MQ=255) cTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctag > 1:4160105‑M1/1‑38 (MQ=255) tttttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagc > 1:1717498‑M1/1‑37 (MQ=255) tttttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagc > 2:1665562‑M1/1‑37 (MQ=255) tttttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagc > 1:4947866‑M1/1‑37 (MQ=255) ttttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagc > 2:3751413‑M1/1‑36 (MQ=255) ttttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagc > 2:2708774‑M1/1‑36 (MQ=255) tttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaag > 2:4093662‑M1/1‑35 (MQ=255) tttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaa < 1:1338771‑M1/49‑15 (MQ=255) tttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaa < 2:2121245‑M1/49‑15 (MQ=255) tttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagca < 2:4711359‑M1/48‑14 (MQ=255) ttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaag > 2:2376911‑M1/1‑34 (MQ=255) ttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaag < 2:5197991‑M1/49‑16 (MQ=255) cACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagca > 1:4834878‑M1/1‑32 (MQ=255) aCTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaa < 2:3562921‑M1/49‑19 (MQ=255) aCTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaa < 1:758308‑M1/49‑19 (MQ=255) cTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaa < 1:4461923‑M1/50‑21 (MQ=255) cTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaa < 1:5122548‑M1/50‑21 (MQ=255) cTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaa < 1:1774332‑M1/50‑21 (MQ=255) cTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaa > 1:5363919‑M1/1‑30 (MQ=255) tGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaa > 2:4431197‑M1/1‑29 (MQ=255) tGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaa > 1:2109510‑M1/1‑29 (MQ=255) gAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaat > 1:3176162‑M1/1‑28 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaat < 1:5643990‑M1/49‑23 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaat > 2:223301‑M1/1‑27 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaat < 2:4552406‑M1/49‑23 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaat < 2:112325‑M1/49‑23 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaat < 1:32486‑M1/49‑23 (MQ=255) gTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatg > 1:2101039‑M1/1‑26 (MQ=255) ttattaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatga > 2:4826184‑M1/1‑25 (MQ=255) tattaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaa > 2:5596951‑M1/1‑24 (MQ=255) attaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaa < 1:896626‑M1/49‑27 (MQ=255) attaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaa > 2:1240660‑M1/1‑23 (MQ=255) attaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaa > 2:1805619‑M1/1‑23 (MQ=255) attaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaa < 2:2027365‑M1/49‑27 (MQ=255) ttaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaaca < 2:1549542‑M1/50‑29 (MQ=255) taAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacag > 2:4591314‑M1/1‑21 (MQ=255) aaaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacag > 2:2570630‑M1/1‑20 (MQ=255) aaaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacag < 2:2633218‑M1/49‑30 (MQ=255) aaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacagga < 1:3886332‑M1/50‑32 (MQ=255) aaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacagg > 2:5702909‑M1/1‑19 (MQ=255) aaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacagg < 1:2977846‑M1/49‑31 (MQ=255) aaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacagg > 1:604318‑M1/1‑19 (MQ=255) cATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaat < 2:4985289‑M1/50‑34 (MQ=255) aTACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaat > 1:3707954‑M1/1‑16 (MQ=255) aTACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaat > 1:3396773‑M1/1‑16 (MQ=255) tACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataa < 1:658250‑M1/50‑36 (MQ=255) cTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataat < 1:1552401‑M1/49‑37 (MQ=255) cTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataat < 1:1215073‑M1/49‑37 (MQ=255) cgcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcg > 1:1902955‑M1/1‑11 (MQ=255) gcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaa < 1:3090242‑M1/50‑41 (MQ=255) gcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcga < 1:4983476‑M1/49‑40 (MQ=255) gcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcga < 2:1952773‑M1/49‑40 (MQ=255) gcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcg < 2:542773‑M1/48‑39 (MQ=255) gcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcg < 2:4019443‑M1/48‑39 (MQ=255) gAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat < 2:3947024‑M1/50‑43 (MQ=255) gAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat > 2:1312589‑M1/1‑8 (MQ=255) gAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat > 1:4961441‑M1/1‑8 (MQ=255) gAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat > 1:2158764‑M1/1‑8 (MQ=255) aGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatg < 1:2829925‑M1/50‑44 (MQ=255) gcgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggga > 2:76613‑M1/1‑4 (MQ=255) gcgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggga < 1:1017447‑M1/50‑47 (MQ=255) cgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat < 1:3499347‑M1/50‑48 (MQ=255) cgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat > 1:4812793‑M1/1‑3 (MQ=255) cgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat > 1:5002601‑M1/1‑3 (MQ=255) gTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatg > 1:3640464‑M1/1‑2 (MQ=255) gTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatg < 2:290987‑M1/50‑49 (MQ=255) gTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatg > 1:4106853‑M1/1‑2 (MQ=255) gTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatg < 1:5516266‑M1/50‑49 (MQ=255) gTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatg > 1:5645259‑M1/1‑2 (MQ=255) gTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatg < 1:840110‑M1/50‑49 (MQ=255) tcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgt > 1:4250359‑M1/1‑1 (MQ=255) | AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTAATTTTTTTGTCCTTCAGCGATAATTCACAATCACTTCATTACGTTGTA > NC_000913/1962516‑1962614 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |