| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,846,301 | Δ20,968 bp | [hycE]–[rpoS] | 21 genes [hycE], hycD, hycC, hycB, hycA, hypA, hypB, hypC, hypD, hypE, fhlA, ygbA, mutS, pphB, ygbI, ygbJ, ygbK, ygbL, ygbM, ygbN, [rpoS] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2846301 | 2867268 | 20968 | 130 [0] | [0] 131 | [hycE]–[rpoS] | [hycE],hycD,hycC,hycB,hycA,hypA,hypB,hypC,hypD,hypE,fhlA,ygbA,mutS,pphB,ygbI,ygbJ,ygbK,ygbL,ygbM,ygbN,[rpoS] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 0 (0.000) | 119 (0.850) | 62/92 | 0.0 | 100% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 0 (0.000) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
Only 100 of 139 total aligned reads displayed.
AAACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2846249‑2846300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAA > NC_000913/2867269‑2867317 AAACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC > 2:2087543/1‑50AAACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC > 2:32351/1‑50AAACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC > 1:2507371/1‑50 AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCG < 1:4308833/50‑1 AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC > 1:3448367/1‑49 AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC > 2:3716184/1‑49 GGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATC < 2:156851/50‑1 GGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAT > 1:4934999/1‑49 GCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCA > 1:476193/1‑50 GCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCA > 2:3140205/1‑50 CGTAATGACCATTCAGTTTGCGTTCGTCGTTACCACACAGCACCGATCAT > 2:3458778/1‑50 CGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCAT > 1:554617/1‑50 CGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCAT > 2:428681/1‑50 GTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATC > 1:1631757/1‑50 TAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCC > 2:1982784/1‑50 TAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCC < 1:2288740/50‑1 AATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCag > 2:4460201/1‑48 AATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCG > 1:6116/1‑50 AATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCG > 1:3342064/1‑50 ATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGG > 1:975445/1‑50 ATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGG < 2:1714976/50‑1 TGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGC > 1:1185643/1‑50 TGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGC > 2:504622/1‑50 GACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCG > 1:5421084/1‑50 GACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCG > 2:2684042/1‑50 ACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCG < 1:5642648/49‑1 CATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 2:723052/1‑49 CATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 2:2458885/1‑49 ATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 2:4624353/1‑48 TTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGcg < 2:3843015/50‑3 TTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAG < 2:1081853/50‑1 TTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAG < 1:5558833/50‑1 TCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGA > 2:5167564/1‑48 TCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGA > 1:3393875/1‑48 CAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAG > 1:4015028/1‑50 CAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGA < 1:5095317/49‑1 AGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGATAG < 2:3603916/49‑1 AGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGG > 2:154934/1‑50 GTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGC < 2:3009061/50‑1 GTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGC > 2:3412633/1‑50 GTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGC < 1:505091/50‑1 TTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCt < 1:2289916/50‑2 TTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGC > 1:5043325/1‑49 TTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGA > 2:532805/1‑50 CGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACAT > 2:4355949/1‑50 GTTCGTCGTTACCAAACGGCACCGATCAGCCGGCGGCGAGATGCGACATC < 2:344797/50‑1 TTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCT < 1:5643162/50‑1 TTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCT > 1:1732446/1‑50 TCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTC > 1:2906994/1‑50 TCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTC > 1:2603153/1‑50 CGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTC < 1:5472764/49‑1 CGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTC > 1:2915232/1‑49 CGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTC > 1:2054505/1‑49 CGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTC < 2:4889810/49‑1 GTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCA > 2:4036102/1‑50 GTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCA > 1:5153648/1‑50 GTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCA > 1:4159632/1‑50 TCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCAC > 1:1605048/1‑50 CGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:3787816/1‑50 CGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 2:1310363/1‑50 GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:3985957/1‑49 GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:5150541/1‑49 GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 2:4385015/1‑49 GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG < 1:3967074/49‑1 GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:1954396/1‑49 GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:943042/1‑49 GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG < 1:880599/49‑1 TTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:40220/1‑48 ACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGT > 1:75642/1‑50 CCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTG > 2:2595704/1‑50 CCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTG < 2:4918164/50‑1 CCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGT < 1:3277675/49‑1 CAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGC < 1:935404/50‑1 CAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGC > 1:3066175/1‑50 CAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGC < 2:2737677/50‑1 AAACAGCACCGATCATCCGGTGGCGAGAGGCGACATCTCCACGCAGTGCG > 1:3390053/1‑50 AAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCG > 2:5608655/1‑50 AACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGC < 1:1335189/50‑1 AACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGC > 1:3031729/1‑50 CAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGA > 1:5472465/1‑50 AGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAC < 1:2765474/50‑1 AGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAC > 2:389991/1‑50 AGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAC > 1:3871800/1‑50 AGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAC < 2:604627/50‑1 AGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAC < 2:2357022/50‑1 AGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAC < 2:5593295/50‑1 AGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAC < 1:4938152/50‑1 GCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACG < 2:5180429/50‑1 CACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGC > 1:242966/1‑50 CACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGC > 1:4437415/1‑50 ACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCG < 1:3335055/50‑1 ACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCG > 2:2808201/1‑50 ACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCG < 1:787195/50‑1 CGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCA < 2:4074302/50‑1 GATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAA < 1:1300665/50‑1 GATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCA > 1:4767515/1‑49 GATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCA > 1:4362471/1‑49 GATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCA > 2:2674539/1‑49 ATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAA < 1:4968374/50‑1 ATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAA > 2:3146018/1‑49 AAACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2846249‑2846300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAA > NC_000913/2867269‑2867317 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |