| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,846,301 | Δ20,968 bp | [hycE]–[rpoS] | 21 genes [hycE], hycD, hycC, hycB, hycA, hypA, hypB, hypC, hypD, hypE, fhlA, ygbA, mutS, pphB, ygbI, ygbJ, ygbK, ygbL, ygbM, ygbN, [rpoS] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2846301 | 2867268 | 20968 | 130 [0] | [0] 131 | [hycE]–[rpoS] | [hycE],hycD,hycC,hycB,hycA,hypA,hypB,hypC,hypD,hypE,fhlA,ygbA,mutS,pphB,ygbI,ygbJ,ygbK,ygbL,ygbM,ygbN,[rpoS] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 0 (0.000) | 119 (0.850) | 62/92 | 0.0 | 100% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 0 (0.000) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
Only 100 of 130 total aligned reads displayed.
CGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGCAGG > NC_000913/2846252‑2846349 | cGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAt < 1:3346310‑M1/50‑2 (MQ=255)cGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAt < 1:742451‑M1/50‑2 (MQ=255) ggCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtc < 1:815725‑M1/50‑3 (MQ=255) ggCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtc < 2:156851‑M1/50‑3 (MQ=255) ggCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtc < 2:1676461‑M1/50‑3 (MQ=255) gCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtca > 1:476193‑M1/1‑47 (MQ=255) cGTAATGACCATTCAGTTTGCGTTCGTCGTTACCACACAGCACCGAtcat > 2:3458778‑M1/1‑46 (MQ=255) cGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcat > 1:554617‑M1/1‑46 (MQ=255) cGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcat > 2:428681‑M1/1‑46 (MQ=255) gTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatc > 1:1631757‑M1/1‑45 (MQ=255) tAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatcc < 2:2570145‑M1/50‑7 (MQ=255) tAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatcc < 1:2288740‑M1/50‑7 (MQ=255) tAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatcc > 2:1982784‑M1/1‑44 (MQ=255) aaTGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccg > 1:3342064‑M1/1‑43 (MQ=255) aaTGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccg > 1:6116‑M1/1‑43 (MQ=255) aaTGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatcag > 2:4460201‑M1/1‑43 (MQ=255) aTGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccgg < 1:5127873‑M1/50‑9 (MQ=255) aTGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccgg > 1:975445‑M1/1‑42 (MQ=255) tGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggc > 2:504622‑M1/1‑41 (MQ=255) tGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggc > 1:1185643‑M1/1‑41 (MQ=255) gACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcg > 1:5421084‑M1/1‑40 (MQ=255) aCCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcg < 1:5642648‑M1/49‑11 (MQ=255) cATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 2:723052‑M1/1‑37 (MQ=255) cATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 2:5678258‑M1/1‑37 (MQ=255) aTTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 2:4624353‑M1/1‑36 (MQ=255) aTTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 1:2451024‑M1/1‑36 (MQ=255) ttCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgcg < 2:3843015‑M1/50‑16 (MQ=255) ttCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgag < 1:5558833‑M1/50‑16 (MQ=255) ttCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgag < 2:1081853‑M1/50‑16 (MQ=255) ttCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 2:5144605‑M1/1‑35 (MQ=255) tCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcga > 2:5167564‑M1/1‑34 (MQ=255) tCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcga > 1:2653836‑M1/1‑34 (MQ=255) tCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcga > 1:3393875‑M1/1‑34 (MQ=255) cAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagag > 1:4877859‑M1/1‑33 (MQ=255) cAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagag > 2:5303807‑M1/1‑33 (MQ=255) cAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagag > 1:4015028‑M1/1‑33 (MQ=255) cAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgaga < 1:5095317‑M1/49‑17 (MQ=255) aGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgatag < 2:3603916‑M1/49‑18 (MQ=255) aGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagagg > 2:154934‑M1/1‑32 (MQ=255) aGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagagg > 2:2684118‑M1/1‑32 (MQ=255) gTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggc > 2:3412633‑M1/1‑31 (MQ=255) gTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggc < 1:505091‑M1/50‑20 (MQ=255) gTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggc < 2:3009061‑M1/50‑20 (MQ=255) tttGCGTTCGTCGTTACCAAACAGCACCGAtcatcaggcggcgagaggcg < 1:3959603‑M1/50‑21 (MQ=255) ttGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcga > 2:532805‑M1/1‑29 (MQ=255) cGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgacat > 2:4355949‑M1/1‑26 (MQ=255) gTTCGTCGTTACCAAACGGCACCGAtcagccggcggcgagatgcgacatc < 2:344797‑M1/50‑26 (MQ=255) gTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgacatc < 1:547307‑M1/50‑26 (MQ=255) gTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgacatc < 1:295656‑M1/50‑26 (MQ=255) ttCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgacatct > 1:1732446‑M1/1‑24 (MQ=255) ttCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgacatct < 1:5643162‑M1/50‑27 (MQ=255) tcgtcgTTACCAAACAGCACCGAtcatccggcggcgtgaggcgacatctc > 2:4208119‑M1/1‑23 (MQ=255) tcgtcgTTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctc > 1:2906994‑M1/1‑23 (MQ=255) tcgtcgTTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctc > 2:2108127‑M1/1‑23 (MQ=255) tcgtcgTTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctc > 1:2603153‑M1/1‑23 (MQ=255) cgtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctc > 1:2915232‑M1/1‑22 (MQ=255) cgtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctc > 1:2054505‑M1/1‑22 (MQ=255) gtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctcca > 2:4036102‑M1/1‑21 (MQ=255) gtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctcca > 1:4159632‑M1/1‑21 (MQ=255) tcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccac > 1:5187530‑M1/1‑20 (MQ=255) tcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccac < 1:2151517‑M1/50‑31 (MQ=255) tcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccac > 1:4201155‑M1/1‑20 (MQ=255) cgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg > 1:3787816‑M1/1‑19 (MQ=255) cgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg > 2:1310363‑M1/1‑19 (MQ=255) gtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg > 1:943042‑M1/1‑18 (MQ=255) gtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg < 1:880599‑M1/49‑32 (MQ=255) gtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg > 1:3985957‑M1/1‑18 (MQ=255) gtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg > 1:5150541‑M1/1‑18 (MQ=255) ccAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtg < 2:4918164‑M1/50‑37 (MQ=255) ccAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtg > 2:2595704‑M1/1‑14 (MQ=255) ccAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagt < 1:3277675‑M1/49‑36 (MQ=255) cAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgc < 2:4869725‑M1/50‑38 (MQ=255) cAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgc < 2:4021198‑M1/50‑38 (MQ=255) cAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgc < 2:2737677‑M1/50‑38 (MQ=255) cAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgc > 1:3066175‑M1/1‑13 (MQ=255) aaaCAGCACCGAtcatccggtggcgagaggcgacatctccacgcagtgcg > 1:3390053‑M1/1‑12 (MQ=255) aaCAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgc < 1:1335189‑M1/50‑40 (MQ=255) cAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcga > 1:5472465‑M1/1‑9 (MQ=255) cAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcga < 1:1429397‑M1/50‑42 (MQ=255) aGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgac < 2:5593295‑M1/50‑43 (MQ=255) aGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgac < 2:604627‑M1/50‑43 (MQ=255) aGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgac > 1:3871800‑M1/1‑8 (MQ=255) aGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgac > 2:389991‑M1/1‑8 (MQ=255) aGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgac < 2:2357022‑M1/50‑43 (MQ=255) aGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgac < 1:4938152‑M1/50‑43 (MQ=255) gCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacg < 2:317063‑M1/50‑44 (MQ=255) cACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgc > 1:1803326‑M1/1‑6 (MQ=255) cACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgc > 1:4437415‑M1/1‑6 (MQ=255) cACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgc > 1:242966‑M1/1‑6 (MQ=255) aCCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcg > 2:2808201‑M1/1‑5 (MQ=255) aCCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcg < 1:787195‑M1/50‑46 (MQ=255) ccGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcg > 1:5028539‑M1/1‑4 (MQ=255) gAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaa < 1:1300665‑M1/50‑49 (MQ=255) gAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgca > 1:4767515‑M1/1‑2 (MQ=255) gAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgca > 2:2674539‑M1/1‑2 (MQ=255) gAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgca > 1:4362471‑M1/1‑2 (MQ=255) gAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgca > 1:4018800‑M1/1‑2 (MQ=255) atcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaaa < 1:4968374‑M1/50‑50 (MQ=255) atcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaa > 1:3196494‑M1/1‑1 (MQ=255) atcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaa > 2:3146018‑M1/1‑1 (MQ=255) | CGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGCAGG > NC_000913/2846252‑2846349 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |