| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,453,928 | Δ15,926 bp | gspA–[chiA] | 16 genes gspA, gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO, bfr, bfd, [chiA] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3453928 | 3469853 | 15926 | 123 [0] | [0] 122 | gspA–[chiA] | gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,[chiA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3453927 | 0 (0.000) | 115 (0.820) | 63/92 | 0.0 | 100% | coding (1/420 nt) | gspB | putative general secretion pathway protein B |
| ? | NC_000913 | 3469854 = | 0 (0.000) | intergenic (‑1/+291) | chiA/tufA | endochitinase/translation elongation factor Tu 1 | |||||
Only 100 of 126 total aligned reads displayed.
CAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3453876‑3453927‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGA > NC_000913/3469854‑3469902 CAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAAC < 1:4940967/50‑1 AGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACA > 2:457167/1‑50 AGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACA < 2:4744519/50‑1 GGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATT < 1:5106835/50‑1 GTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTA < 1:3084135/50‑1 GTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTA > 1:2617770/1‑50 GTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTA < 2:5064498/50‑1 GTGACCTATTTCTTTCTGCTCACGCGCGGCGATATAGAATTCATACATTA < 2:4741716/50‑1 TGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTAT < 1:1015346/50‑1 TGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTAT < 1:1378903/50‑1 ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAA > 1:1817971/1‑50 ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAA < 1:1139074/50‑1 ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAA < 2:810599/50‑1 ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAA < 2:1489315/50‑1 ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAA < 1:5546806/50‑1 ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATA < 2:1688670/49‑1 CTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATC < 1:2104396/50‑1 TGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCC > 2:1310831/1‑50 GTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCC > 2:520834/1‑50 GTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCC > 1:2950738/1‑50 GTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCC > 1:2617762/1‑50 TTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCT > 2:1920724/1‑50 TTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCT < 1:1497538/50‑1 TTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTT > 1:992793/1‑50 TTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTT > 2:140215/1‑50 TTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTT > 1:1067964/1‑50 TCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTG > 2:3814693/1‑50 TCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTG > 2:5012677/1‑50 CTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGT > 2:4850295/1‑50 CTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTG < 1:1800050/49‑1 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGAC > 1:1545283/1‑50 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGA < 2:4750023/49‑1 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGA < 1:5668386/49‑1 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTG < 2:1284038/48‑1 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTG < 2:5644017/48‑1 CTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACG > 1:3295582/1‑50 CTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACG > 1:1908189/1‑50 CTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGAC < 1:4879386/49‑1 CTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGAC < 1:4913763/49‑1 CTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGAC < 2:3045200/49‑1 CTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGAC < 2:1803906/49‑1 GCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGT > 1:4596306/1‑49 CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAA < 1:3209222/50‑1 CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAA < 2:2920207/50‑1 CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTA > 2:3125598/1‑49 CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGT < 2:4100345/48‑1 CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACG < 1:4097210/47‑1 CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACG < 2:4209611/47‑1 CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACG < 1:3442222/47‑1 TCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAA > 1:226715/1‑49 TCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAA > 2:711806/1‑49 TCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAA > 1:2654139/1‑49 ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAA < 1:593508/49‑1 ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAA < 1:4078196/48‑1 CGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAAC > 1:4680763/1‑50 GCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACT < 2:1569993/50‑1 GCGGCGATATAGACTTCAAACATTATAATCCCTTGTGACGTAAAAACTG > 1:3715293/1‑49 GCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGC < 1:2287083/50‑1 GCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTG > 2:2626638/1‑49 CGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGC > 2:2363043/1‑49 CGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGC > 2:2423403/1‑49 GGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAA < 1:4442776/50‑1 GGCGATATAGAATTCAAACATTATAATCCCTGGGGACGTAAAAACGGCA > 2:1674384/1‑49 GCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAA < 2:1349402/50‑1 GCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAA > 2:1532687/1‑49 GCGATATAGAATTCAAACATTATAATCCCTTGCGACGTAAAAACTGCAAA < 2:5032560/50‑1 CGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA < 1:279312/50‑1 GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAAC < 2:3026553/50‑1 GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA > 2:1335522/1‑49 GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA > 1:3294005/1‑49 ATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAAC > 2:3470390/1‑49 TATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA < 2:1480569/50‑1 TATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACA > 2:2292293/1‑49 TATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACA > 1:5136080/1‑49 TATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACA > 1:4765527/1‑49 TATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACA > 1:4099480/1‑49 ATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA > 2:5029554/1‑49 TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAA < 2:5286662/50‑1 TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA > 1:2357563/1‑48 GAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGT > 1:1330526/1‑50 GAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAG < 1:2648431/49‑1 AATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTC > 2:319341/1‑50 AATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTC < 1:5246240/50‑1 TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCT < 2:3384926/50‑1 TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCT < 1:3836446/50‑1 TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCT < 2:3637277/50‑1 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > 2:1093157/1‑50 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG < 1:1554597/50‑1 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > 1:3566594/1‑50 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC < 1:737245/49‑1 AACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGC < 2:2904413/50‑1 AACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGC < 1:5040238/50‑1 ACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCA < 1:2501516/50‑1 ACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > 2:462632/1‑48 CATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG > 1:3724502/1‑50 CATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG < 2:613549/50‑1 ATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGG < 1:446364/50‑1 ATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG > 1:2963583/1‑49 TTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGA < 2:760218/50‑1 TTATAATCCCTTGTGAAGTAAAAACTGCAAAACAAAAGTCCTACGCAGG > 2:4468792/1‑49 CAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3453876‑3453927‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGA > NC_000913/3469854‑3469902 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |