| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,453,928 | Δ15,926 bp | gspA–[chiA] | 16 genes gspA, gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO, bfr, bfd, [chiA] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3453928 | 3469853 | 15926 | 123 [0] | [0] 122 | gspA–[chiA] | gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,[chiA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3453927 | 0 (0.000) | 115 (0.820) | 63/92 | 0.0 | 100% | coding (1/420 nt) | gspB | putative general secretion pathway protein B |
| ? | NC_000913 | 3469854 = | 0 (0.000) | intergenic (‑1/+291) | chiA/tufA | endochitinase/translation elongation factor Tu 1 | |||||
Only 100 of 122 total aligned reads displayed.
ACACCAGCCCCATACCAATCATAGATTTAGTAAATATATTTAATTTCATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGA > NC_000913/3469805‑3469902 | ggtgacctgtttctttctgctcacgcgcggcgatatagaattcaaacatt < 2:1968075‑M2/1‑1 (MQ=255)ggtgacctgtttctttctgctcacgcgcggcgatatagaattcaaacatt < 1:5106835‑M2/1‑1 (MQ=255) gtgacctgtttctttctgctcacgcgcggcgatatagaattcaaacatta < 2:701997‑M2/2‑1 (MQ=255) gtgacctgtttctttctgctcacgcgcggcgatatagaattcaaacatta < 1:3084135‑M2/2‑1 (MQ=255) gtgacctgtttctttctgctcacgcgcggcgatatagaattcaaacatta > 1:2617770‑M2/49‑50 (MQ=255) gtgacctgtttctttctgctcacgcgcggcgatatagaattcaaacatta < 2:5064498‑M2/2‑1 (MQ=255) gtgacctatttctttctgctcacgcgcggcgatatagaattcatacatta < 2:4741716‑M2/2‑1 (MQ=255) tgacctgtttctttctgctcacgcgcggcgatatagaattcaaacattat < 1:1015346‑M2/3‑1 (MQ=255) acctgtttctttctgctcacgcgcggcgatatagaattcaaacatTATaa < 1:1139074‑M2/5‑1 (MQ=255) acctgtttctttctgctcacgcgcggcgatatagaattcaaacatTATaa < 2:810599‑M2/5‑1 (MQ=255) acctgtttctttctgctcacgcgcggcgatatagaattcaaacatTATaa < 1:2246059‑M2/5‑1 (MQ=255) acctgtttctttctgctcacgcgcggcgatatagaattcaaacatTATaa < 1:5546806‑M2/5‑1 (MQ=255) ctgtttctttctgctcacgcgcggcgatatagaattcaaacatTATAATc < 1:2104396‑M2/7‑1 (MQ=255) gtttctttctgctcacgcgcggcgatatagaattcaaacatTATAATccc > 1:2950738‑M2/42‑50 (MQ=255) gtttctttctgctcacgcgcggcgatatagaattcaaacatTATAATccc > 1:2617762‑M2/42‑50 (MQ=255) gtttctttctgctcacgcgcggcgatatagaattcaaacatTATAATccc > 2:520834‑M2/42‑50 (MQ=255) tttctttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCt > 2:1920724‑M2/41‑50 (MQ=255) tttctttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCt < 1:1497538‑M2/10‑1 (MQ=255) ttctttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCtt > 1:992793‑M2/40‑50 (MQ=255) ttctttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCtt > 2:140215‑M2/40‑50 (MQ=255) ttctttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCtt > 1:1067964‑M2/40‑50 (MQ=255) tctttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCtt < 2:3067339‑M2/11‑1 (MQ=255) tctttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTtg > 2:1480436‑M2/39‑50 (MQ=255) tctttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTtg > 2:3814693‑M2/39‑50 (MQ=255) tctttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTtg > 2:5012677‑M2/39‑50 (MQ=255) ctttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTtgt > 2:4850295‑M2/38‑50 (MQ=255) ctttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTtg < 1:1800050‑M2/12‑1 (MQ=255) ctttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTtg < 1:49433‑M2/12‑1 (MQ=255) tctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTtgtg < 2:1284038‑M2/14‑1 (MQ=255) tctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTtgtg < 2:5644017‑M2/14‑1 (MQ=255) tctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGa < 1:5668386‑M2/15‑1 (MQ=255) tctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGAc > 1:1545283‑M2/35‑50 (MQ=255) ctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGAc < 2:1803906‑M2/16‑1 (MQ=255) ctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGAc < 2:3045200‑M2/16‑1 (MQ=255) ctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGAc < 1:4913763‑M2/16‑1 (MQ=255) ctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGAc < 1:4879386‑M2/16‑1 (MQ=255) ctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACg > 1:1908189‑M2/34‑50 (MQ=255) ctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACg > 1:3295582‑M2/34‑50 (MQ=255) gctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGt > 1:4596306‑M2/32‑49 (MQ=255) gctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGt > 1:1764001‑M2/32‑49 (MQ=255) ctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACg < 1:3442222‑M2/17‑1 (MQ=255) ctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACg < 2:2808339‑M2/17‑1 (MQ=255) ctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACg < 2:4209611‑M2/17‑1 (MQ=255) ctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACg < 1:4097210‑M2/17‑1 (MQ=255) ctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGt < 2:4100345‑M2/18‑1 (MQ=255) ctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTaa < 1:3209222‑M2/20‑1 (MQ=255) ctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTaa < 2:2920207‑M2/20‑1 (MQ=255) ctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTa > 2:3125598‑M2/31‑49 (MQ=255) ctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTa > 2:5165497‑M2/31‑49 (MQ=255) tcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTaa > 1:2654139‑M2/30‑49 (MQ=255) tcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTaa > 2:711806‑M2/30‑49 (MQ=255) tcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTaa > 1:226715‑M2/30‑49 (MQ=255) cacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTaaa > 1:5544‑M2/29‑49 (MQ=255) acgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTaaa < 1:4078196‑M2/21‑1 (MQ=255) cgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAAc > 1:4680763‑M2/27‑50 (MQ=255) gcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACt < 2:1569993‑M2/25‑1 (MQ=255) gcggcgatatagacttcaaacatTATAATCCCTTGTGACGTAAAAACTg > 1:3715293‑M2/24‑49 (MQ=255) gcggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTg > 1:4416873‑M2/24‑49 (MQ=255) gcggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTg > 1:724655‑M2/24‑49 (MQ=255) gcggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTg > 2:2626638‑M2/24‑49 (MQ=255) cggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGc > 2:2363043‑M2/23‑49 (MQ=255) ggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGca > 1:4760536‑M2/22‑49 (MQ=255) ggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGca > 1:2696241‑M2/22‑49 (MQ=255) ggcgatatagaattcaaacatTATAATCCCTGGGGACGTAAAAACGGca > 2:1674384‑M2/22‑49 (MQ=255) gcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaa < 2:1349402‑M2/30‑1 (MQ=255) gcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaa > 2:1532687‑M2/21‑49 (MQ=255) cgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaa < 1:279312‑M2/31‑1 (MQ=255) gatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaa > 2:1335522‑M2/19‑49 (MQ=255) gatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaa > 1:3294005‑M2/19‑49 (MQ=255) atatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaac > 2:3470390‑M2/18‑49 (MQ=255) atatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaac > 1:2594427‑M2/18‑49 (MQ=255) tatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaacaa < 2:1480569‑M2/34‑1 (MQ=255) tatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaacaa < 1:1331574‑M2/34‑1 (MQ=255) tatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaaca > 2:2292293‑M2/17‑49 (MQ=255) tatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaaca > 1:4099480‑M2/17‑49 (MQ=255) tatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaaca > 2:4721354‑M2/17‑49 (MQ=255) atagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaacaa > 2:5029554‑M2/16‑49 (MQ=255) tagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaacaaaa < 2:5286662‑M2/36‑1 (MQ=255) tagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaacaaa < 2:1597509‑M2/35‑1 (MQ=255) tagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaacaa > 1:2357563‑M2/15‑48 (MQ=255) gaattcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGt > 1:1330526‑M2/13‑50 (MQ=255) aattcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTc < 1:5246240‑M2/39‑1 (MQ=255) aattcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTc < 1:3190473‑M2/39‑1 (MQ=255) aattcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTc > 2:319341‑M2/12‑50 (MQ=255) ttcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCt < 2:3637277‑M2/41‑1 (MQ=255) ttcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCt < 2:3384926‑M2/41‑1 (MQ=255) ttcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCt < 1:3836446‑M2/41‑1 (MQ=255) aaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAc < 1:737245‑M2/43‑1 (MQ=255) aaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACg > 2:1093157‑M2/7‑50 (MQ=255) aaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACg > 1:3566594‑M2/7‑50 (MQ=255) aaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACg < 1:1554597‑M2/44‑1 (MQ=255) aacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGc < 2:2904413‑M2/45‑1 (MQ=255) aacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGc < 1:5040238‑M2/45‑1 (MQ=255) acatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACg > 2:462632‑M2/5‑48 (MQ=255) acatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCa < 1:2501516‑M2/46‑1 (MQ=255) catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAg > 1:3724502‑M2/4‑50 (MQ=255) catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAg > 2:4925413‑M2/4‑50 (MQ=255) atTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAgg < 1:446364‑M2/48‑1 (MQ=255) tTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGa < 2:760218‑M2/49‑1 (MQ=255) tTATAATCCCTTGTGAAGTAAAAACTGCAAAACAAAAGTCCTACGCAgg > 2:4468792‑M2/2‑49 (MQ=255) | ACACCAGCCCCATACCAATCATAGATTTAGTAAATATATTTAATTTCATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGA > NC_000913/3469805‑3469902 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |