| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 263,514 | Δ61,897 bp | [ykfI]–ykgH | 71 genes [ykfI], yafW, ykfH, ykfG, yafX, ykfF, ykfB, yafY, yafZ, ykfA, perR, insN, insI‑1, insN, eyeA, ykfC, insH‑1, mmuP, mmuM, afuC, afuB, insB‑2, insA‑2, yagB, yagA, yagE, yagF, yagG, yagH, xynR, argF, ykgS, insB‑3, insA‑3, yagJ, yagK, yagL, yagM, ykgV, yagN, intF, yagP, paoD, paoC, paoB, paoA, yagU, ykgJ, ecpE, ecpD, ecpC, ecpB, ecpA, ecpR, ykgL, ykgO, ykgM, ykgR, ykgP, eaeH, insE‑1, insF‑1, ykgA, rclC, rclB, rclA, rclR, ykgE, ykgF, ykgG, ykgH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 263514 | 325410 | 61897 | 201 [0] | [0] 204 | [ykfI]–ykgH | [ykfI],yafW,ykfH,ykfG,yafX,ykfF,ykfB,yafY,yafZ,ykfA,perR,insN,insI‑1,insN,eyeA,ykfC,insH‑1,mmuP,mmuM,afuC,afuB,insB‑2,insA‑2,yagB,yagA,yagE,yagF,yagG,yagH,xynR,argF,ykgS,insB‑3,insA‑3,yagJ,yagK,yagL,yagM,ykgV,yagN,intF,yagP,paoD,paoC,paoB,paoA,yagU,ykgJ,ecpE,ecpD,ecpC,ecpB,ecpA,ecpR,ykgL,ykgO,ykgM,ykgR,ykgP,eaeH,insE‑1,insF‑1,ykgA,rclC,rclB,rclA,rclR,ykgE,ykgF,ykgG,ykgH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 263513 | 0 (0.000) | 187 (1.310) | 77/94 | 0.0 | 100% | coding (157/342 nt) | ykfI | CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| ? | NC_000913 | 325411 = | 0 (0.000) | intergenic (‑47/+166) | ykgH/betA | uncharacterized protein YkgH/choline dehydrogenase | |||||
Only 100 of 201 total aligned reads displayed.
TTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATGTGTTCCTTAATCACAGCCTCATTGCAGAATGGCGTGTCGTTTATTGTC > NC_000913/263465‑263562 | tttCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGAT < 1:4058375‑M1/49‑1 (MQ=255) ttCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATag > 1:1601908‑M1/1‑48 (MQ=255) ttCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATag > 1:5218040‑M1/1‑48 (MQ=255) ttCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATag > 1:2714350‑M1/1‑48 (MQ=255) ttCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATa < 1:3392755‑M1/49‑2 (MQ=255) tCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATag < 2:1097481‑M1/49‑3 (MQ=255) cTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtc > 1:4915456‑M1/1‑46 (MQ=255) cTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtc > 1:1451791‑M1/1‑46 (MQ=255) cTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtc > 2:3433162‑M1/1‑46 (MQ=255) cTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagt < 2:1595538‑M1/49‑4 (MQ=255) cTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagt < 1:354810‑M1/49‑4 (MQ=255) cTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagt < 2:2658451‑M1/49‑4 (MQ=255) aCCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctg > 2:452235‑M1/1‑44 (MQ=255) ccAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgt < 1:794180‑M1/50‑8 (MQ=255) ccAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctg < 2:3006505‑M1/49‑7 (MQ=255) ccAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctg < 2:2547857‑M1/49‑7 (MQ=255) ccAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctg > 1:1793385‑M1/1‑43 (MQ=255) ccAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtc < 1:4489833‑M1/47‑5 (MQ=255) cAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgta > 2:74405‑M1/1‑42 (MQ=255) aGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtat < 2:2809194‑M1/50‑10 (MQ=255) aGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtat < 1:2861802‑M1/50‑10 (MQ=255) aGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtat < 1:2153535‑M1/50‑10 (MQ=255) aaaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatca < 1:886408‑M1/50‑12 (MQ=255) aaaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatca < 2:4700404‑M1/50‑12 (MQ=255) aaaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtat > 1:3972399‑M1/1‑39 (MQ=255) aaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcag < 2:3152567‑M1/50‑13 (MQ=255) aaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcag < 1:3109739‑M1/50‑13 (MQ=255) aaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcagg < 2:3402604‑M1/50‑14 (MQ=255) aaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcagg < 1:856209‑M1/50‑14 (MQ=255) aaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcagg < 1:2562092‑M1/50‑14 (MQ=255) aaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcagg < 2:4259637‑M1/50‑14 (MQ=255) aaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcag > 2:2155439‑M1/1‑37 (MQ=255) aTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcagga < 2:3552697‑M1/50‑15 (MQ=255) aTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcagg > 1:246948‑M1/1‑36 (MQ=255) aTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcagg > 1:3281388‑M1/1‑36 (MQ=255) aTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcagg > 2:835428‑M1/1‑36 (MQ=255) ttCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaa < 1:4243877‑M1/50‑16 (MQ=255) ttCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaa < 1:1421441‑M1/50‑16 (MQ=255) cACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatg > 1:2702182‑M1/1‑33 (MQ=255) cACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatg > 1:3008171‑M1/1‑33 (MQ=255) cACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatg > 2:236209‑M1/1‑33 (MQ=255) cACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaat < 1:1909225‑M1/49‑17 (MQ=255) aCGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgt < 1:3817934‑M1/50‑19 (MQ=255) aCGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatg < 1:5520763‑M1/49‑18 (MQ=255) aCGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatg < 1:5170138‑M1/49‑18 (MQ=255) aCGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatg < 2:2285325‑M1/49‑18 (MQ=255) cGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgtt > 1:4585034‑M1/1‑31 (MQ=255) cGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgtt < 2:51205‑M1/50‑20 (MQ=255) ggCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttc > 1:2658698‑M1/1‑30 (MQ=255) ggCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttc > 2:5384780‑M1/1‑30 (MQ=255) gCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcg < 2:4355372‑M1/50‑22 (MQ=255) cATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgg > 2:418832‑M1/1‑28 (MQ=255) cATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgg > 2:1792010‑M1/1‑28 (MQ=255) cATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgg > 1:3303946‑M1/1‑28 (MQ=255) cATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgg < 1:4127844‑M1/50‑23 (MQ=255) aTCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcggg < 2:1077609‑M1/50‑24 (MQ=255) ggCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggtta < 1:5356946‑M1/50‑27 (MQ=255) ggCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggtta < 2:3587081‑M1/50‑27 (MQ=255) ggCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggtt > 2:1458114‑M1/1‑24 (MQ=255) cTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaa > 1:3628344‑M1/1‑22 (MQ=255) cTAGGGTGATACCGGCATCGATagtctgtatcaggaatgctcgggttaaa > 2:2470166‑M1/1‑22 (MQ=255) tAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaa > 1:1254188‑M1/1‑21 (MQ=255) tAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaa > 2:1973780‑M1/1‑21 (MQ=255) tAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaa > 1:3634413‑M1/1‑21 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttgaata < 1:4403524‑M1/49‑31 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatat < 2:462666‑M1/50‑32 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatat < 1:2445178‑M1/50‑32 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatat < 1:4197509‑M1/50‑32 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatat < 1:5563366‑M1/50‑32 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaata < 2:5438384‑M1/49‑31 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaata < 2:3754571‑M1/49‑31 (MQ=255) ggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatat > 2:2888779‑M1/1‑18 (MQ=255) gTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatat > 2:5329007‑M1/1‑17 (MQ=255) gTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatat > 1:4632135‑M1/1‑17 (MQ=255) tGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcag < 1:2206798‑M1/50‑35 (MQ=255) aTACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagca < 1:584374‑M1/50‑37 (MQ=255) aTACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagca < 2:4478263‑M1/50‑37 (MQ=255) aCCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaa > 1:2896735‑M1/1‑12 (MQ=255) cGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaa > 2:775136‑M1/1‑10 (MQ=255) gCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagc > 2:5477924‑M1/1‑8 (MQ=255) cATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcc > 1:2381187‑M1/1‑7 (MQ=255) cATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcc < 2:2583391‑M1/50‑44 (MQ=255) aTCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagccc < 1:703320‑M1/50‑45 (MQ=255) aTCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagccc < 2:137667‑M1/50‑45 (MQ=255) aTCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagccc < 1:5274834‑M1/50‑45 (MQ=255) tCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccg < 2:1717159‑M1/50‑46 (MQ=255) tCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccg > 1:5674269‑M1/1‑5 (MQ=255) cGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccg > 2:453580‑M1/1‑4 (MQ=255) cGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccg > 2:3091123‑M1/1‑4 (MQ=255) gATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgca > 1:1040640‑M1/1‑3 (MQ=255) gATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgc < 2:4832838‑M1/49‑47 (MQ=255) gATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgc < 2:3288534‑M1/49‑47 (MQ=255) gATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgc < 2:1205502‑M1/49‑47 (MQ=255) aTagtctgtatcaggaatgttcgggttaaatatcagccaaaagcccgcat > 1:1689887‑M1/1‑2 (MQ=255) aTagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgcat > 2:5635231‑M1/1‑2 (MQ=255) aTagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgcat > 2:914199‑M1/1‑2 (MQ=255) tagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgcatc < 2:1172526‑M1/50‑50 (MQ=255) tagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgcatc < 2:645013‑M1/50‑50 (MQ=255) tagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgcat > 2:1204538‑M1/1‑1 (MQ=255) tagtctgtatcaggaatgttcgggttaaatatagcaaaaagcccgcatca > 2:802206‑M1/1‑1 (MQ=255) | TTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATGTGTTCCTTAATCACAGCCTCATTGCAGAATGGCGTGTCGTTTATTGTC > NC_000913/263465‑263562 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |