| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 263,514 | Δ61,897 bp | [ykfI]–ykgH | 71 genes [ykfI], yafW, ykfH, ykfG, yafX, ykfF, ykfB, yafY, yafZ, ykfA, perR, insN, insI‑1, insN, eyeA, ykfC, insH‑1, mmuP, mmuM, afuC, afuB, insB‑2, insA‑2, yagB, yagA, yagE, yagF, yagG, yagH, xynR, argF, ykgS, insB‑3, insA‑3, yagJ, yagK, yagL, yagM, ykgV, yagN, intF, yagP, paoD, paoC, paoB, paoA, yagU, ykgJ, ecpE, ecpD, ecpC, ecpB, ecpA, ecpR, ykgL, ykgO, ykgM, ykgR, ykgP, eaeH, insE‑1, insF‑1, ykgA, rclC, rclB, rclA, rclR, ykgE, ykgF, ykgG, ykgH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 263514 | 325410 | 61897 | 201 [0] | [0] 204 | [ykfI]–ykgH | [ykfI],yafW,ykfH,ykfG,yafX,ykfF,ykfB,yafY,yafZ,ykfA,perR,insN,insI‑1,insN,eyeA,ykfC,insH‑1,mmuP,mmuM,afuC,afuB,insB‑2,insA‑2,yagB,yagA,yagE,yagF,yagG,yagH,xynR,argF,ykgS,insB‑3,insA‑3,yagJ,yagK,yagL,yagM,ykgV,yagN,intF,yagP,paoD,paoC,paoB,paoA,yagU,ykgJ,ecpE,ecpD,ecpC,ecpB,ecpA,ecpR,ykgL,ykgO,ykgM,ykgR,ykgP,eaeH,insE‑1,insF‑1,ykgA,rclC,rclB,rclA,rclR,ykgE,ykgF,ykgG,ykgH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 263513 | 0 (0.000) | 187 (1.310) | 77/94 | 0.0 | 100% | coding (157/342 nt) | ykfI | CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| ? | NC_000913 | 325411 = | 0 (0.000) | intergenic (‑47/+166) | ykgH/betA | uncharacterized protein YkgH/choline dehydrogenase | |||||
Only 100 of 204 total aligned reads displayed.
ATAATATATCCAGAGAATAAAATCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCATCA > NC_000913/325363‑325460 | ttctaccagaaaattcacggcatcggctagggtgataccggcatcgata < 1:796388‑M2/1‑1 (MQ=255)ttctaccagaaaattcacggcatcggctagggtgataccggcatcgatAg > 1:1601908‑M2/49‑50 (MQ=255)ttctaccagaaaattcacggcatcggctagggggataccggcatcgatAg > 1:2013921‑M2/49‑50 (MQ=255) tctaccagaaaattcacggcatcggctagggtgataccggcatcgatAg < 1:2946899‑M2/2‑1 (MQ=255) tctaccagaaaattcacggcatcggctagggtgataccggcatcgatAg < 2:1097481‑M2/2‑1 (MQ=255) ctaccagaaaattcacggcatcggctagggtgataccggcatcgatAGt < 1:2561715‑M2/3‑1 (MQ=255) ctaccagaaaattcacggcatcggctagggtgataccggcatcgatAGt < 2:2658451‑M2/3‑1 (MQ=255) ctaccagaaaattcacggcatcggctagggtgataccggcatcgatAGt < 2:1595538‑M2/3‑1 (MQ=255) ctaccagaaaattcacggcatcggctagggtgataccggcatcgatAGTc > 2:3433162‑M2/47‑50 (MQ=255) ctaccagaaaattcacggcatcggctagggtgataccggcatcgatAGTc > 2:3319363‑M2/47‑50 (MQ=255) ctaccagaaaattcacggcatcggctagggtgataccggcatcgatAGTc > 1:1451791‑M2/47‑50 (MQ=255) taccagaaaattcacggcatcggctagggtgataccggcatcgatAGTCt > 1:3133135‑M2/46‑50 (MQ=255) accagaaaattcacggcatcggctagggtgataccggcatcgatAGTCTg > 2:452235‑M2/45‑50 (MQ=255) ccagaaaattcacggcatcggctagggtgataccggcatcgatAGTc < 1:2704199‑M2/4‑1 (MQ=255) ccagaaaattcacggcatcggctagggtgataccggcatcgatAGTCTg < 2:2547857‑M2/6‑1 (MQ=255) ccagaaaattcacggcatcggctagggtgataccggcatcgatAGTCTGt < 1:3979763‑M2/7‑1 (MQ=255) cagaaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTa > 2:74405‑M2/43‑50 (MQ=255) agaaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTAt < 1:1712125‑M2/9‑1 (MQ=255) agaaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTAt > 1:451399‑M2/42‑50 (MQ=255) agaaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTAt < 2:2809194‑M2/9‑1 (MQ=255) gaaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTAt > 1:3294987‑M2/41‑49 (MQ=255) aaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTATCa < 2:4700404‑M2/11‑1 (MQ=255) aaattcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAg < 1:2684735‑M2/12‑1 (MQ=255) aaattcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAg > 2:3107612‑M2/39‑50 (MQ=255) aattcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAgg < 2:4259637‑M2/13‑1 (MQ=255) aattcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAg > 2:2155439‑M2/38‑49 (MQ=255) attcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAgg > 1:2763611‑M2/37‑49 (MQ=255) attcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAgg > 2:835428‑M2/37‑49 (MQ=255) attcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGa < 2:3552697‑M2/14‑1 (MQ=255) ttcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGaa < 1:1421441‑M2/15‑1 (MQ=255) cacggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAAt < 1:4974477‑M2/16‑1 (MQ=255) cacggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATg > 2:236209‑M2/34‑50 (MQ=255) acggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATg < 2:2285325‑M2/17‑1 (MQ=255) acggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATg < 1:87175‑M2/17‑1 (MQ=255) acggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGt < 1:3817934‑M2/18‑1 (MQ=255) cggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGtt < 2:51205‑M2/19‑1 (MQ=255) ggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTc < 2:3080075‑M2/20‑1 (MQ=255) ggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTc > 1:4161067‑M2/31‑50 (MQ=255) ggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTc > 2:5384780‑M2/31‑50 (MQ=255) gcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCg < 1:5200786‑M2/21‑1 (MQ=255) gcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCg < 2:4355372‑M2/21‑1 (MQ=255) catcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCgg > 1:2402005‑M2/29‑50 (MQ=255) catcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCgg > 2:418832‑M2/29‑50 (MQ=255) catcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCgg > 2:1792010‑M2/29‑50 (MQ=255) atcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCggg < 2:1077609‑M2/23‑1 (MQ=255) atcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCggg < 1:641670‑M2/23‑1 (MQ=255) cggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGt > 1:4241255‑M2/26‑49 (MQ=255) ggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGtt > 2:1458114‑M2/25‑49 (MQ=255) ggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTa < 2:3587081‑M2/26‑1 (MQ=255) gctagggtgataccggcaacgatAGTCTGTATCAGGAATGTTCGGGTTaa < 1:5301512‑M2/27‑1 (MQ=255) ctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTaaa > 1:3628344‑M2/23‑50 (MQ=255) ctagggtgataccggcatcgatAGTCTGTATCAGGAATGCTCGGGTTaaa > 2:2470166‑M2/23‑50 (MQ=255) tagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTaaa > 2:1973780‑M2/22‑49 (MQ=255) tagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTaaa > 1:1254188‑M2/22‑49 (MQ=255) tagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTaaa > 1:3398598‑M2/22‑49 (MQ=255) tagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTaaa > 1:3634413‑M2/22‑49 (MQ=255) gggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAatat < 2:462666‑M2/31‑1 (MQ=255) gggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAata < 2:3754571‑M2/30‑1 (MQ=255) gggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAata < 2:5438384‑M2/30‑1 (MQ=255) gggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAata < 1:4605781‑M2/30‑1 (MQ=255) ggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAatat > 2:2888779‑M2/19‑49 (MQ=255) gtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAatat > 2:5329007‑M2/18‑48 (MQ=255) tgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAg > 1:303177‑M2/17‑50 (MQ=255) tgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAg < 1:1855928‑M2/34‑1 (MQ=255) ataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGc < 1:2594619‑M2/35‑1 (MQ=255) ataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGc < 1:443839‑M2/35‑1 (MQ=255) ataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGc > 1:4276662‑M2/15‑49 (MQ=255) ataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCa < 2:4478263‑M2/36‑1 (MQ=255) taccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaa < 1:5259894‑M2/37‑1 (MQ=255) taccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaa < 1:724822‑M2/37‑1 (MQ=255) accggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaa > 1:2196143‑M2/13‑49 (MQ=255) cggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaaaaa < 1:2297094‑M2/40‑1 (MQ=255) cggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaaa > 1:3353884‑M2/11‑48 (MQ=255) cggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaaa > 2:775136‑M2/11‑48 (MQ=255) ggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAg > 1:577497‑M2/10‑50 (MQ=255) ggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAg > 1:5526035‑M2/10‑50 (MQ=255) ggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAg > 1:4719798‑M2/10‑50 (MQ=255) gcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGc > 2:5477924‑M2/9‑50 (MQ=255) catcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGcc < 2:2583391‑M2/43‑1 (MQ=255) atcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGccc < 2:137667‑M2/44‑1 (MQ=255) atcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGccc > 2:3241700‑M2/7‑50 (MQ=255) tcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCg > 1:5433871‑M2/6‑50 (MQ=255) tcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCg < 1:5563384‑M2/45‑1 (MQ=255) tcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCg < 2:1717159‑M2/45‑1 (MQ=255) cgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCg > 2:453580‑M2/5‑49 (MQ=255) cgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCg > 2:3003869‑M2/5‑49 (MQ=255) gatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGc < 2:1205502‑M2/46‑1 (MQ=255) gatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGc < 2:4832838‑M2/46‑1 (MQ=255) gatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCa > 1:1040640‑M2/4‑50 (MQ=255) atAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAt > 2:914199‑M2/3‑50 (MQ=255) atAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAt > 1:2875176‑M2/3‑50 (MQ=255) atAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAt > 2:5635231‑M2/3‑50 (MQ=255) tAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAt > 2:1204538‑M2/2‑49 (MQ=255) tAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCATc < 2:1172526‑M2/49‑1 (MQ=255) tAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCATc < 2:645013‑M2/49‑1 (MQ=255) tAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCATc < 1:2450076‑M2/49‑1 (MQ=255) tAGTCTGTATCAGGAATGTTCGGGTTAAATAT‑AGCAAAAAGCCCGCATCa > 2:802206‑M2/2‑50 (MQ=255) aGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGcctca > 1:1676980/1‑50 (MQ=255) aGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGcatca > 1:412041/1‑50 (MQ=255) aGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGcatca > 1:3938681/1‑50 (MQ=255) | ATAATATATCCAGAGAATAAAATCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCATCA > NC_000913/325363‑325460 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |