| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 565,055 | Δ21,054 bp | [intD]–ompT | 37 genes [intD], xisD, exoD, renD, insE‑3, insF‑3, renD, emrE, ylcJ, ybcK, ybcL, ybcM, ylcH, ybcN, ninE, ybcO, rusA, ylcG, ybcQ, nmpC, insH‑2, nmpC, essD, rrrD, rzpD, rzoD, borD, ybcV, ybcW, ylcI, nohD, aaaD, tfaD, ybcY, tfaX, appY, ompT |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 565055 | 586108 | 21054 | 145 [0] | [0] 143 | [intD]–ompT | [intD],xisD,exoD,renD,insE‑3,insF‑3,renD,emrE,ylcJ,ybcK,ybcL,ybcM,ylcH,ybcN,ninE,ybcO,rusA,ylcG,ybcQ,nmpC,insH‑2,nmpC,essD,rrrD,rzpD,rzoD,borD,ybcV,ybcW,ylcI,nohD,aaaD,tfaD,ybcY,tfaX,appY,ompT |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 565054 | 0 (0.000) | 134 (1.000) | 65/88 | 0.0 | 100% | coding (925/1164 nt) | intD | DLP12 prophage; putative integrase |
| ? | NC_000913 | 586109 = | 0 (0.000) | intergenic (‑476/+38) | ompT/envY | outer membrane protease VII (outer membrane protein 3b)/DNA‑binding transcriptional activator EnvY | |||||
Only 100 of 145 total aligned reads displayed.
ATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGAT > NC_000913/565005‑565102 | aTCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC > 2:867499‑M1/1‑50 (MQ=255)aTCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC > 1:17399‑M1/1‑50 (MQ=255) tCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCc < 2:1700539‑M1/50‑2 (MQ=255) cagccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCct > 2:3777388‑M1/1‑48 (MQ=255) agccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctc < 2:1717425‑M1/50‑4 (MQ=255) agccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctc < 2:2803170‑M1/50‑4 (MQ=255) agccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctc < 1:1134401‑M1/50‑4 (MQ=255) agccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCct < 1:5328584‑M1/49‑3 (MQ=255) gccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctca > 1:1558354‑M1/1‑46 (MQ=255) gccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctca < 1:4745887‑M1/50‑5 (MQ=255) cagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 1:2614934‑M1/1‑44 (MQ=255) cagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 1:282186‑M1/1‑44 (MQ=255) cagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt < 2:1506027‑M1/50‑7 (MQ=255) cagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 2:2043408‑M1/1‑44 (MQ=255) agcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcattt < 1:4900218‑M1/50‑8 (MQ=255) agcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcattt < 2:3152499‑M1/50‑8 (MQ=255) agcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 1:549807‑M1/1‑43 (MQ=255) agcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 2:3808953‑M1/1‑43 (MQ=255) agcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 1:3565230‑M1/1‑43 (MQ=255) agcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 1:4511544‑M1/1‑43 (MQ=255) gcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcattta > 2:1471439‑M1/1‑42 (MQ=255) gcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcattta > 2:938022‑M1/1‑42 (MQ=255) gcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcattta < 2:3532793‑M1/50‑9 (MQ=255) gcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcattta < 2:699020‑M1/50‑9 (MQ=255) cTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttat < 2:1824274‑M1/50‑10 (MQ=255) cTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttat < 1:5242186‑M1/50‑10 (MQ=255) gCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgc < 2:504715‑M1/49‑12 (MQ=255) gCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatg < 2:4715330‑M1/48‑11 (MQ=255) tccaGGTGTGTCTGAGGTCATGGCAACGGAAATCTTActcatttatgcc < 2:141237‑M1/48‑13 (MQ=255) cccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgccc < 2:2119624‑M1/50‑14 (MQ=255) cccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgccc < 1:2456495‑M1/50‑14 (MQ=255) cccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcc < 2:1550705‑M1/49‑13 (MQ=255) cccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcc < 1:5688211‑M1/49‑13 (MQ=255) cccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcc < 2:4686160‑M1/49‑13 (MQ=255) ccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccg < 1:3513026‑M1/50‑15 (MQ=255) cAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgt < 2:1077242‑M1/50‑16 (MQ=255) aGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtc > 1:342867‑M1/1‑34 (MQ=255) ggTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtct < 1:5562240‑M1/50‑18 (MQ=255) ggTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtct < 2:2586716‑M1/50‑18 (MQ=255) gtgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtctt < 2:5686447‑M1/50‑19 (MQ=255) gtgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtctt < 1:3147051‑M1/50‑19 (MQ=255) gtgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtctt < 1:1807335‑M1/50‑19 (MQ=255) gtgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtct > 1:417547‑M1/1‑32 (MQ=255) gtgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtct > 2:2398847‑M1/1‑32 (MQ=255) tgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtctta > 2:5317348‑M1/1‑31 (MQ=255) tgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtctta < 1:2945359‑M1/50‑20 (MQ=255) tgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatc < 1:5642785‑M1/50‑22 (MQ=255) tgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatc < 2:2453909‑M1/50‑22 (MQ=255) tgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatc > 1:2095868‑M1/1‑29 (MQ=255) tgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttat < 2:3154779‑M1/49‑21 (MQ=255) gtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatcc > 2:810419‑M1/1‑28 (MQ=255) tCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccg > 1:2438363‑M1/1‑27 (MQ=255) tCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccg > 1:4748928‑M1/1‑27 (MQ=255) tCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccg > 2:5268537‑M1/1‑27 (MQ=255) tCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatcc < 1:3713368‑M1/49‑23 (MQ=255) cTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgt > 1:3944048‑M1/1‑26 (MQ=255) cTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgt > 2:2122255‑M1/1‑26 (MQ=255) gAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgttt > 2:507923‑M1/1‑24 (MQ=255) gAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgttt > 1:2602765‑M1/1‑24 (MQ=255) aGGGCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtt < 2:3858503‑M1/48‑26 (MQ=255) ggTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttcc < 1:3134757‑M1/50‑29 (MQ=255) ggTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttcc < 1:3126762‑M1/50‑29 (MQ=255) ggTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttcc < 1:741713‑M1/50‑29 (MQ=255) ggTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttcc < 1:4487181‑M1/50‑29 (MQ=255) gTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccg > 2:4703504‑M1/1‑21 (MQ=255) gTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccg > 1:946580‑M1/1‑21 (MQ=255) tCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgc > 1:1020946‑M1/1‑20 (MQ=255) cATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgct > 2:3172622‑M1/1‑19 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctt < 2:156527‑M1/50‑33 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctt > 2:3089692‑M1/1‑18 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctt < 2:620785‑M1/50‑33 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctt < 2:2519518‑M1/50‑33 (MQ=255) aTGGAAACGGAAATCTACctcatttatgcccgtcttatccgtttccgctt < 2:3619431‑M1/50‑33 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgcttt < 2:4370977‑M1/50‑34 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgcttt < 2:1948306‑M1/50‑34 (MQ=255) gAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgc > 1:4160392‑M1/1‑15 (MQ=255) gAAACGGAAATCTTCctcatttatgcccgtcttatccgtttcc < 1:2078272‑M1/43‑29 (MQ=255) gAAACGGAAATCTTCctcattgatgcccgtcttatccgtttccgctttgc > 2:419236‑M1/1‑15 (MQ=255) aaaCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcc > 1:1577509‑M1/1‑14 (MQ=255) aCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccct > 1:1974966‑M1/1‑12 (MQ=255) cGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccctt > 2:2825960‑M1/1‑11 (MQ=255) cGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccctt < 2:1971378‑M1/50‑40 (MQ=255) cGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccctt > 1:2693125‑M1/1‑11 (MQ=255) ggAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccctt > 1:5396914‑M1/1‑10 (MQ=255) gAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcccttca < 1:3415231‑M1/50‑42 (MQ=255) gAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcccttca > 1:5037466‑M1/1‑9 (MQ=255) aaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacc < 1:4028326‑M1/50‑44 (MQ=255) aaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacc < 1:2979213‑M1/50‑44 (MQ=255) aaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacc < 1:1377846‑M1/50‑44 (MQ=255) aaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcac > 1:1121611‑M1/1‑7 (MQ=255) aaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcac > 2:1030474‑M1/1‑7 (MQ=255) aTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacca > 2:5143945‑M1/1‑6 (MQ=255) aTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacca < 2:1813211‑M1/50‑45 (MQ=255) tCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacca > 2:3213196‑M1/1‑5 (MQ=255) ttCctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat > 1:1386694‑M1/1‑3 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacatc < 1:38099‑M1/49‑49 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat < 2:4041688‑M1/48‑48 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat < 1:4089961‑M1/48‑48 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccaca < 2:2792642‑M1/47‑47 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccac < 2:3098507‑M1/46‑46 (MQ=255) | ATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGAT > NC_000913/565005‑565102 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |